Guide to the Human Genome
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Name: SDF4 Sequence: fasta or formatted (362aa) NCBI GI: 18699732
Description:

stromal cell derived factor 4 isoform 2 precursor

Referenced in:

Calmodulin and Calcium

Other entries for this name:
alt prot [348aa] stromal cell derived factor 4 isoform 1 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         24           1
 C cysteine            0.6          2           2
 D aspartate           8.3         30           2
 E glutamate          12.4         45           3
 F phenylalanine       4.1         15           2
 G glycine             5.0         18           2
 H histidine           3.9         14           2
 I isoleucine          3.3         12           1
 K lysine              6.1         22           2
 L leucine             9.4         34           3
 M methionine          3.6         13           1
 N asparagine          4.4         16           1
 P proline             4.1         15           2
 Q glutamine           3.3         12           2
 R arginine            5.5         20           2
 S serine              5.8         21           2
 T threonine           2.5          9           1
 V valine              7.2         26           1
 W tryptophan          2.2          8           1
 Y tyrosine            1.7          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   stromal cell derived factor 4 isoform 2 precursor [H... 
SDF4                  0.837   stromal cell derived factor 4 isoform 1 precursor [Ho...
CALU                  0.135   calumenin isoform b precursor 
CALU                  0.133   calumenin isoform a precursor 
RCN2                  0.124   reticulocalbin 2 precursor 
RCN1                  0.123   reticulocalbin 1 precursor 
RCN3                  0.105   reticulocalbin 3, EF-hand calcium binding domain [Ho...
CALML3                0.022   calmodulin-like 3 
CETN1                 0.021   centrin 1 
CALML5                0.020   calmodulin-like 5 
CALM3                 0.020   calmodulin 3 
CALM2                 0.020   calmodulin 2 
CALM1                 0.020   calmodulin 1 
TNNC2                 0.020   fast skeletal muscle troponin C 
PLCH1                 0.020   phospholipase C eta 1 isoform c 
PLCH1                 0.020   phospholipase C eta 1 isoform a 
PLCH1                 0.020   phospholipase C eta 1 isoform b 
TNNC1                 0.017   troponin C, slow 
NECAB2                0.017   neuronal calcium-binding protein 2 
SLC25A23              0.017   solute carrier family 25, member 23 
NEXN                  0.017   nexilin (F actin binding protein) 
SLC25A24              0.017   solute carrier family 25 member 24 isoform 2 
EFCAB4B               0.014   EF-hand calcium binding domain 4B isoform c 
EFCAB4B               0.014   EF-hand calcium binding domain 4B isoform b 
EFCAB4B               0.014   EF-hand calcium binding domain 4B isoform a 
PLCD4                 0.014   phospholipase C, delta 4 
CETN2                 0.014   caltractin 
HLA-F                 0.014   major histocompatibility complex, class I, F isofor...
HLA-F                 0.014   major histocompatibility complex, class I, F isofor...
CETN3                 0.013   centrin 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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