Guide to the Human Genome
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Name: CKAP2 Sequence: fasta or formatted (682aa) NCBI GI: 148664244
Description:

cytoskeleton associated protein 2 isoform 1

Referenced in:

Spindle, M phase, and Meiosis

Other entries for this name:
alt prot [683aa] cytoskeleton associated protein 2 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         38           2
 C cysteine            1.5         10           1
 D aspartate           4.5         31           2
 E glutamate           7.9         54           2
 F phenylalanine       1.9         13           1
 G glycine             2.6         18           1
 H histidine           2.2         15           2
 I isoleucine          4.4         30           2
 K lysine             11.0         75           3
 L leucine             8.1         55           3
 M methionine          2.2         15           1
 N asparagine          5.3         36           2
 P proline             5.7         39           2
 Q glutamine           5.7         39           1
 R arginine            5.4         37           2
 S serine              9.2         63           3
 T threonine           8.7         59           2
 V valine              6.3         43           2
 W tryptophan          0.4          3           1
 Y tyrosine            1.3          9           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cytoskeleton associated protein 2 isoform 1 
CKAP2                 0.996   cytoskeleton associated protein 2 isoform 2 
CKAP2L                0.093   cytoskeleton associated protein 2-like 
AFF4                  0.014   ALL1 fused gene from 5q31 
BOD1L                 0.014   biorientation of chromosomes in cell division 1-like...
RNF111                0.013   ring finger protein 111 
KIAA2018              0.013   hypothetical protein LOC205717 
EEA1                  0.012   early endosome antigen 1, 162kD 
CMYA5                 0.012   cardiomyopathy associated 5 
RLIM                  0.011   ring finger protein, LIM domain interacting 
RLIM                  0.011   ring finger protein, LIM domain interacting 
MUC16                 0.011   mucin 16 
NOLC1                 0.011   nucleolar and coiled-body phosphoprotein 1 
CYLC1                 0.011   cylicin, basic protein of sperm head cytoskeleton 1...
ANK3                  0.011   ankyrin 3 isoform 1 
C10orf12              0.011   hypothetical protein LOC26148 
CALD1                 0.011   caldesmon 1 isoform 4 
CALD1                 0.011   caldesmon 1 isoform 3 
MMRN1                 0.011   multimerin 1 
SRRM1                 0.011   serine/arginine repetitive matrix 1 
HDAC9                 0.010   histone deacetylase 9 isoform 5 
WAC                   0.010   WW domain-containing adapter with a coiled-coil regi...
WAC                   0.010   WW domain-containing adapter with a coiled-coil regi...
ZC3H13                0.010   zinc finger CCCH-type containing 13 
LOC100294236          0.009   PREDICTED: similar to diffuse panbronchiolitis crit...
TOP1                  0.009   DNA topoisomerase I 
SPEN                  0.009   spen homolog, transcriptional regulator 
AFF1                  0.009   myeloid/lymphoid or mixed-lineage leukemia trithorax ...
FAM178A               0.009   hypothetical protein LOC55719 isoform 1 
FAM178A               0.009   hypothetical protein LOC55719 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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