Guide to the Human Genome
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Name: LOC100294236 Sequence: fasta or formatted (1400aa) NCBI GI: 239740773
Description:

PREDICTED: similar to diffuse panbronchiolitis critical region 1

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.7        136           2
 C cysteine            0.7         10           1
 D aspartate           1.9         26           1
 E glutamate          11.0        154           2
 F phenylalanine       1.7         24           1
 G glycine             3.5         49           2
 H histidine           1.9         27           2
 I isoleucine          2.7         38           2
 K lysine              4.6         64           2
 L leucine             3.4         48           3
 M methionine          1.3         18           1
 N asparagine          6.1         86           2
 P proline             9.0        126           2
 Q glutamine           1.8         25           1
 R arginine            3.9         55           2
 S serine             11.6        163           3
 T threonine          21.0        294           4
 V valine              3.3         46           2
 W tryptophan          0.1          2           1
 Y tyrosine            0.6          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to diffuse panbronchiolitis crit... 
DPCR1                 0.647   diffuse panbronchiolitis critical region 1 protein ...
LOC729792             0.115   PREDICTED: hypothetical protein 
LOC100294136          0.115   PREDICTED: hypothetical protein 
LOC100294091          0.115   PREDICTED: hypothetical protein 
LOC729792             0.115   PREDICTED: hypothetical protein 
LOC100294501          0.115   PREDICTED: hypothetical protein 
LOC730401             0.115   PREDICTED: hypothetical protein 
LOC729792             0.114   PREDICTED: hypothetical protein 
LOC100294238          0.114   PREDICTED: hypothetical protein 
LOC100294204          0.114   PREDICTED: hypothetical protein 
LOC100294249          0.113   PREDICTED: hypothetical protein XP_002344067 
MUC2                  0.107   mucin 2 precursor 
MUC17                 0.086   mucin 17 
MUC12                 0.076   PREDICTED: mucin 12, cell surface associated 
PRG4                  0.074   proteoglycan 4 isoform B 
PRG4                  0.074   proteoglycan 4 isoform A 
MUC12                 0.073   PREDICTED: mucin 12 
PRG4                  0.072   proteoglycan 4 isoform D 
PRG4                  0.072   proteoglycan 4 isoform C 
MUC5B                 0.065   mucin 5, subtype B, tracheobronchial 
MUC6                  0.062   mucin 6, gastric 
MUC12                 0.061   PREDICTED: mucin 12 
MUC4                  0.060   mucin 4 isoform a 
LOC100131514          0.057   PREDICTED: similar to hCG1747327, partial 
MUC3A                 0.055   PREDICTED: mucin 3A, intestinal 
MUC5AC                0.054   mucin 5AC 
LOC100294420          0.048   PREDICTED: similar to mucin 2 
ZAN                   0.047   zonadhesin isoform 3 
ZAN                   0.047   zonadhesin isoform 6 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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