Guide to the Human Genome
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Name: CKAP2L Sequence: fasta or formatted (745aa) NCBI GI: 167466272
Description:

cytoskeleton associated protein 2-like

Referenced in:

Spindle, M phase, and Meiosis

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7         35           4
 C cysteine            1.3         10           1
 D aspartate           2.7         20           1
 E glutamate           7.5         56           4
 F phenylalanine       2.3         17           1
 G glycine             4.2         31           2
 H histidine           1.2          9           1
 I isoleucine          5.4         40           1
 K lysine             11.7         87           3
 L leucine             7.9         59           2
 M methionine          1.1          8           1
 N asparagine          6.7         50           3
 P proline             7.4         55           2
 Q glutamine           6.2         46           2
 R arginine            5.4         40           2
 S serine              9.1         68           2
 T threonine           7.1         53           2
 V valine              6.0         45           2
 W tryptophan          0.4          3           1
 Y tyrosine            1.7         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cytoskeleton associated protein 2-like 
CKAP2                 0.085   cytoskeleton associated protein 2 isoform 2 
CKAP2                 0.085   cytoskeleton associated protein 2 isoform 1 
TPM1                  0.013   tropomyosin 1 alpha chain isoform 2 
NOLC1                 0.012   nucleolar and coiled-body phosphoprotein 1 
TPM2                  0.012   tropomyosin 2 (beta) isoform 2 
TPM1                  0.012   tropomyosin 1 alpha chain isoform 7 
TPM2                  0.012   tropomyosin 2 (beta) isoform 1 
MYH9                  0.010   myosin, heavy polypeptide 9, non-muscle 
TPM1                  0.010   tropomyosin 1 alpha chain isoform 1 
TPM1                  0.010   tropomyosin 1 alpha chain isoform 3 
BCOR                  0.009   BCL-6 interacting corepressor isoform a 
BCOR                  0.009   BCL-6 interacting corepressor isoform c 
BCOR                  0.009   BCL-6 interacting corepressor isoform b 
BCOR                  0.009   BCL-6 interacting corepressor isoform a 
UBXN2A                0.009   UBX domain containing 4 
TPM1                  0.008   tropomyosin 1 alpha chain isoform 4 
TPM1                  0.008   tropomyosin 1 alpha chain isoform 5 
LIG1                  0.008   DNA ligase I 
TFIP11                0.008   tuftelin interacting protein 11 
TFIP11                0.008   tuftelin interacting protein 11 
RASSF8                0.008   Ras association (RalGDS/AF-6) domain family (N-termi...
RFC1                  0.008   replication factor C large subunit 
UPF2                  0.008   UPF2 regulator of nonsense transcripts homolog [Homo...
UPF2                  0.008   UPF2 regulator of nonsense transcripts homolog [Homo...
PAPD5                 0.008   PAP associated domain containing 5 isoform a 
LOC100133698          0.007   PREDICTED: hypothetical protein 
ITSN1                 0.007   intersectin 1 isoform ITSN-s 
ITSN1                 0.007   intersectin 1 isoform ITSN-l 
NEB                   0.007   nebulin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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