Guide to the Human Genome
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Name: RLIM Sequence: fasta or formatted (624aa) NCBI GI: 34452686
Description:

ring finger protein, LIM domain interacting

Referenced in:

Ring Finger Proteins
Telomere Functions

Other entries for this name:
alt mRNA [624aa] ring finger protein, LIM domain interacting
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.3         27           2
 C cysteine            1.0          6           1
 D aspartate           4.6         29           4
 E glutamate           8.3         52           3
 F phenylalanine       2.6         16           2
 G glycine             8.2         51           3
 H histidine           1.8         11           2
 I isoleucine          3.0         19           2
 K lysine              1.0          6           1
 L leucine             5.8         36           2
 M methionine          1.4          9           1
 N asparagine          6.4         40           2
 P proline             4.5         28           3
 Q glutamine           4.3         27           2
 R arginine           12.0         75           2
 S serine             18.8        117          20
 T threonine           6.2         39           2
 V valine              3.8         24           2
 W tryptophan          0.5          3           1
 Y tyrosine            1.4          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ring finger protein, LIM domain interacting 
RLIM                  1.000   ring finger protein, LIM domain interacting 
RNF6                  0.334   ring finger protein 6 
RNF6                  0.334   ring finger protein 6 
RNF6                  0.334   ring finger protein 6 
RNF13                 0.045   ring finger protein 13 
RNF13                 0.045   ring finger protein 13 
DSPP                  0.045   dentin sialophosphoprotein preproprotein 
RNF167                0.043   ring finger protein 167 
SRRM2                 0.041   splicing coactivator subunit SRm300 
RNF38                 0.041   ring finger protein 38 isoform 2 
RNF38                 0.041   ring finger protein 38 isoform 2 
RNF38                 0.041   ring finger protein 38 isoform 3 
RNF38                 0.041   ring finger protein 38 isoform 2 
RNF38                 0.041   ring finger protein 38 isoform 1 
RNF44                 0.040   ring finger protein 44 
TNRC18                0.039   trinucleotide repeat containing 18 
MUC21                 0.033   mucin 21 
HRNR                  0.033   hornerin 
PNN                   0.033   pinin, desmosome associated protein 
ZNRF4                 0.032   zinc and ring finger 4 
SON                   0.032   SON DNA-binding protein isoform F 
SON                   0.032   SON DNA-binding protein isoform B 
FLG                   0.032   filaggrin 
RNF130                0.032   ring finger protein 130 
ZNRF3                 0.031   zinc and ring finger 3 
SFRS4                 0.030   splicing factor, arginine/serine-rich 4 
RNF111                0.030   ring finger protein 111 
RNF150                0.030   ring finger protein 150 
RNF43                 0.029   ring finger protein 43 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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