| Name: TOP1 | Sequence: fasta or formatted (765aa) | NCBI GI: 11225260 | |
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Description: DNA topoisomerase I
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Referenced in: Additional Interaction Domain Families
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Composition:
Amino acid Percentage Count Longest homopolymer A alanine 5.2 40 1 C cysteine 1.0 8 2 D aspartate 7.5 57 2 E glutamate 11.1 85 4 F phenylalanine 3.4 26 2 G glycine 3.4 26 1 H histidine 3.1 24 1 I isoleucine 4.7 36 3 K lysine 17.5 134 4 L leucine 6.1 47 2 M methionine 2.5 19 2 N asparagine 4.7 36 1 P proline 4.8 37 3 Q glutamine 3.4 26 3 R arginine 5.5 42 2 S serine 4.1 31 2 T threonine 3.5 27 2 V valine 3.9 30 2 W tryptophan 1.7 13 2 Y tyrosine 2.7 21 2 |
Comparative genomics:
Search single species RefSeq proteins at NCBI
Search summary 
Figure data | ||
Related human proteins:Protein Relative score Description Self-match 1.000 DNA topoisomerase I TOP1MT 0.540 mitochondrial topoisomerase I TAF3 0.038 RNA polymerase II transcription factor TAFII140 [Ho... SFRS12 0.037 splicing factor, arginine/serine-rich 12 isoform a ... SFRS12 0.037 splicing factor, arginine/serine-rich 12 isoform b [... LOC100131202 0.036 PREDICTED: hypothetical protein LOC100133599 0.035 PREDICTED: hypothetical protein LOC100133599 0.035 PREDICTED: hypothetical protein LOC100286959 0.034 PREDICTED: hypothetical protein XP_002343921 CYLC2 0.034 cylicin 2 RBM25 0.032 RNA binding motif protein 25 LOC100131202 0.030 PREDICTED: hypothetical protein LOC283685 0.029 PREDICTED: golgi autoantigen, golgin subfamily a-li... ZC3H13 0.029 zinc finger CCCH-type containing 13 DDX23 0.028 DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 LOC100288837 0.028 PREDICTED: hypothetical protein XP_002343931, parti... ANKRD12 0.028 ankyrin repeat domain 12 isoform 2 ANKRD12 0.028 ankyrin repeat domain 12 isoform 1 PRPF38B 0.028 PRP38 pre-mRNA processing factor 38 (yeast) domain ... CCDC55 0.028 coiled-coil domain containing 55 isoform 1 LOC283685 0.027 PREDICTED: golgi autoantigen, golgin subfamily a-li... LOC727832 0.027 golgi autoantigen, golgin subfamily a-like LOC100134067 0.026 PREDICTED: hypothetical protein SNRNP70 0.026 U1 small nuclear ribonucleoprotein 70 kDa LOC440243 0.026 PREDICTED: Putative golgin subfamily A member 6-lik... LOC283767 0.025 golgi autoantigen, golgin subfamily a-like LOC645202 0.025 PREDICTED: hypothetical protein LOC645202 LOC100294088 0.025 PREDICTED: hypothetical protein, partial NEFH 0.025 neurofilament, heavy polypeptide 200kDa CYLC1 0.025 cylicin, basic protein of sperm head cytoskeleton 1...Human BLASTP results (used to prepare the table) | |||
Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.
See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.
