Guide to the Human Genome
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Name: KIAA1217 Sequence: fasta or formatted (1264aa) NCBI GI: 148612813
Description:

sickle tail isoform 2

Referenced in:

Synapses

Other entries for this name:
alt prot [1309aa] sickle tail isoform 3
alt prot [1943aa] sickle tail isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.3        105           2
 C cysteine            0.2          2           1
 D aspartate           4.1         52           1
 E glutamate           6.7         85           7
 F phenylalanine       1.6         20           1
 G glycine             5.5         69           2
 H histidine           3.2         41           2
 I isoleucine          3.2         40           2
 K lysine              6.2         79           2
 L leucine             7.9        100           2
 M methionine          3.9         49           2
 N asparagine          2.9         37           1
 P proline            10.2        129           8
 Q glutamine           5.1         65           2
 R arginine            5.9         74           2
 S serine             12.3        155           3
 T threonine           5.7         72           3
 V valine              4.7         59           2
 W tryptophan          0.2          2           1
 Y tyrosine            2.3         29           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   sickle tail isoform 2 
KIAA1217              0.967   sickle tail isoform 3 
KIAA1217              0.836   sickle tail isoform 1 
SNIP                  0.249   SNAP25-interacting protein 
NOLC1                 0.019   nucleolar and coiled-body phosphoprotein 1 
SRRM2                 0.017   splicing coactivator subunit SRm300 
PRG4                  0.016   proteoglycan 4 isoform B 
PRG4                  0.016   proteoglycan 4 isoform A 
SRRM1                 0.015   serine/arginine repetitive matrix 1 
PRB4                  0.014   proline-rich protein BstNI subfamily 4 precursor [Ho...
MLLT1                 0.013   myeloid/lymphoid or mixed-lineage leukemia (trithora...
ZNF828                0.013   zinc finger protein 828 
NACA                  0.013   nascent polypeptide-associated complex alpha subuni...
RERE                  0.013   atrophin-1 like protein isoform b 
RERE                  0.013   atrophin-1 like protein isoform a 
RERE                  0.013   atrophin-1 like protein isoform a 
KIAA1522              0.013   hypothetical protein LOC57648 
WIPF2                 0.013   WIRE protein 
C6orf132              0.012   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.012   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.012   PREDICTED: hypothetical protein LOC647024 
NUP214                0.012   nucleoporin 214kDa 
PRG4                  0.012   proteoglycan 4 isoform D 
PRG4                  0.012   proteoglycan 4 isoform C 
MDC1                  0.012   mediator of DNA-damage checkpoint 1 
FLJ22184              0.012   PREDICTED: hypothetical protein LOC80164 
CASKIN2               0.012   cask-interacting protein 2 isoform b 
CASKIN2               0.012   cask-interacting protein 2 isoform a 
ARHGAP17              0.012   nadrin isoform 1 
ARHGAP17              0.012   nadrin isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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