Guide to the Human Genome
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Name: MAP7D3 Sequence: fasta or formatted (876aa) NCBI GI: 147903302
Description:

MAP7 domain containing 3

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.6         75           3
 C cysteine            0.7          6           1
 D aspartate           4.3         38           2
 E glutamate          11.0         96           4
 F phenylalanine       1.6         14           1
 G glycine             3.2         28           2
 H histidine           1.3         11           1
 I isoleucine          3.3         29           1
 K lysine             11.2         98           4
 L leucine             5.8         51           2
 M methionine          3.5         31           2
 N asparagine          3.4         30           2
 P proline             5.8         51           2
 Q glutamine           5.4         47           3
 R arginine            7.0         61           3
 S serine             10.6         93           3
 T threonine           6.2         54           2
 V valine              5.4         47           2
 W tryptophan          0.5          4           1
 Y tyrosine            1.4         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   MAP7 domain containing 3 
MAP7D1                0.090   MAP7 domain containing 1 
MAP7                  0.075   microtubule-associated protein 7 
MAP7D2                0.049   MAP7 domain containing 2 
LOC100133636          0.034   PREDICTED: similar to hCG1806822 
NEFH                  0.026   neurofilament, heavy polypeptide 200kDa 
ZC3H18                0.025   zinc finger CCCH-type containing 18 
TTN                   0.025   titin isoform N2-A 
PRG4                  0.024   proteoglycan 4 isoform D 
PRG4                  0.024   proteoglycan 4 isoform C 
PRG4                  0.024   proteoglycan 4 isoform B 
PRG4                  0.024   proteoglycan 4 isoform A 
MUC2                  0.023   mucin 2 precursor 
ACIN1                 0.023   apoptotic chromatin condensation inducer 1 
INCENP                0.021   inner centromere protein antigens 135/155kDa isofor...
RP1L1                 0.020   retinitis pigmentosa 1-like 1 
LOC100133599          0.020   PREDICTED: hypothetical protein 
NOLC1                 0.020   nucleolar and coiled-body phosphoprotein 1 
INCENP                0.020   inner centromere protein antigens 135/155kDa isofor...
TCHH                  0.019   trichohyalin 
RSF1                  0.019   remodeling and spacing factor 1 
SFRS17A               0.019   DNA segment on chromosome X and Y (unique) 155 expre...
LOC100294088          0.019   PREDICTED: hypothetical protein, partial 
DGKK                  0.019   diacylglycerol kinase kappa 
LOC100286959          0.019   PREDICTED: hypothetical protein XP_002343921 
CALD1                 0.019   caldesmon 1 isoform 1 
SPEF2                 0.019   KPL2 protein isoform 2 
SPEF2                 0.019   KPL2 protein isoform 1 
RBM25                 0.017   RNA binding motif protein 25 
GIGYF2                0.017   GRB10 interacting GYF protein 2 isoform c 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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