Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SPEF2 Sequence: fasta or formatted (514aa) NCBI GI: 21389509
Description:

KPL2 protein isoform 2

Not currently referenced in the text

Other entries for this name:
alt prot {1822aa} KPL2 protein isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         38           2
 C cysteine            0.6          3           1
 D aspartate           5.8         30           2
 E glutamate          10.3         53           2
 F phenylalanine       4.3         22           2
 G glycine             1.6          8           1
 H histidine           2.5         13           1
 I isoleucine          5.1         26           2
 K lysine             10.7         55           4
 L leucine            11.3         58           2
 M methionine          2.9         15           2
 N asparagine          3.7         19           2
 P proline             2.1         11           1
 Q glutamine           7.8         40           2
 R arginine            7.6         39           3
 S serine              4.5         23           2
 T threonine           4.5         23           3
 V valine              3.7         19           1
 W tryptophan          0.6          3           1
 Y tyrosine            3.1         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   KPL2 protein isoform 2 
SPEF2                 0.987   KPL2 protein isoform 1 
LOC645202             0.038   PREDICTED: hypothetical protein LOC645202 
TCHH                  0.035   trichohyalin 
LOC727832             0.035   golgi autoantigen, golgin subfamily a-like 
MAP7D3                0.032   MAP7 domain containing 3 
INCENP                0.032   inner centromere protein antigens 135/155kDa isofor...
INCENP                0.030   inner centromere protein antigens 135/155kDa isofor...
LOC283685             0.029   PREDICTED: golgi autoantigen, golgin subfamily a-li...
CCDC11                0.029   coiled-coil domain containing 11 
LOC440243             0.028   PREDICTED: Putative golgin subfamily A member 6-lik...
MYO6                  0.027   myosin VI 
GOLGA4                0.027   golgi autoantigen, golgin subfamily a, 4 
CCDC41                0.027   NY-REN-58 antigen 
CCDC41                0.027   NY-REN-58 antigen 
KIAA1009              0.027   KIAA1009 protein 
MYO18A                0.026   myosin 18A isoform b 
MYO18A                0.026   myosin 18A isoform a 
GIGYF2                0.026   GRB10 interacting GYF protein 2 isoform c 
GIGYF2                0.026   GRB10 interacting GYF protein 2 isoform a 
GIGYF2                0.026   GRB10 interacting GYF protein 2 isoform b 
GIGYF2                0.026   GRB10 interacting GYF protein 2 isoform b 
MYH11                 0.026   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.026   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.026   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.026   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
CEP250                0.025   centrosomal protein 2 
MYH9                  0.024   myosin, heavy polypeptide 9, non-muscle 
KIF21A                0.024   kinesin family member 21A 
SCAPER                0.024   S-phase cyclin A-associated protein in the ER isofo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press