Guide to the Human Genome
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Name: SFRS17A Sequence: fasta or formatted (695aa) NCBI GI: 41152097
Description:

DNA segment on chromosome X and Y (unique) 155 expressed sequence isoform 1

Referenced in:

Capping and Splicing

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         43           3
 C cysteine            1.6         11           1
 D aspartate           4.9         34           2
 E glutamate          11.5         80           3
 F phenylalanine       2.6         18           2
 G glycine             5.0         35           2
 H histidine           3.0         21           1
 I isoleucine          3.2         22           1
 K lysine              9.2         64           2
 L leucine             8.8         61           3
 M methionine          1.7         12           1
 N asparagine          2.3         16           2
 P proline             4.7         33           2
 Q glutamine           5.5         38           3
 R arginine           12.5         87           3
 S serine              8.3         58           2
 T threonine           3.2         22           2
 V valine              4.0         28           2
 W tryptophan          0.6          4           1
 Y tyrosine            1.2          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   DNA segment on chromosome X and Y (unique) 155 expre... 
INCENP                0.052   inner centromere protein antigens 135/155kDa isofor...
INCENP                0.052   inner centromere protein antigens 135/155kDa isofor...
TCHH                  0.051   trichohyalin 
GIGYF2                0.046   GRB10 interacting GYF protein 2 isoform c 
GIGYF2                0.046   GRB10 interacting GYF protein 2 isoform a 
GIGYF2                0.046   GRB10 interacting GYF protein 2 isoform b 
GIGYF2                0.046   GRB10 interacting GYF protein 2 isoform b 
LOC100133599          0.046   PREDICTED: hypothetical protein 
LOC645202             0.043   PREDICTED: hypothetical protein LOC645202 
LOC100133599          0.043   PREDICTED: hypothetical protein 
LOC283685             0.043   PREDICTED: golgi autoantigen, golgin subfamily a-li...
MAP4K4                0.042   mitogen-activated protein kinase kinase kinase kinas...
LOC283767             0.041   golgi autoantigen, golgin subfamily a-like 
LOC647042             0.041   PREDICTED: hypothetical protein isoform 1 
LOC727832             0.041   golgi autoantigen, golgin subfamily a-like 
RBM25                 0.040   RNA binding motif protein 25 
LOC440243             0.040   PREDICTED: Putative golgin subfamily A member 6-lik...
EIF5B                 0.040   eukaryotic translation initiation factor 5B 
LOC100133758          0.039   PREDICTED: hypothetical protein, partial 
LOC283685             0.039   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC100286959          0.038   PREDICTED: hypothetical protein XP_002343921 
CALD1                 0.038   caldesmon 1 isoform 1 
ACIN1                 0.038   apoptotic chromatin condensation inducer 1 
ENAH                  0.038   enabled homolog isoform a 
ENAH                  0.038   enabled homolog isoform b 
LOC400352             0.038   PREDICTED: similar to Putative golgin subfamily A m...
LOC100132816          0.038   PREDICTED: similar to Putative golgin subfamily A m...
TNIK                  0.036   TRAF2 and NCK interacting kinase isoform 6 
UPF3B                 0.036   UPF3 regulator of nonsense transcripts homolog B iso...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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