Guide to the Human Genome
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Name: LOC100294088 Sequence: fasta or formatted (123aa) NCBI GI: 239508778
Description:

PREDICTED: hypothetical protein, partial

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             0.0          0           0
 C cysteine            0.0          0           0
 D aspartate           0.0          0           0
 E glutamate          39.8         49          10
 F phenylalanine       0.0          0           0
 G glycine             1.6          2           1
 H histidine           0.0          0           0
 I isoleucine          0.0          0           0
 K lysine             39.0         48           8
 L leucine             0.0          0           0
 M methionine          0.0          0           0
 N asparagine          0.0          0           0
 P proline             0.0          0           0
 Q glutamine           0.0          0           0
 R arginine           13.8         17           3
 S serine              0.0          0           0
 T threonine           5.7          7           1
 V valine              0.0          0           0
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein, partial 
LOC100133599          0.415   PREDICTED: hypothetical protein 
LOC100133599          0.396   PREDICTED: hypothetical protein 
WDR87                 0.304   NYD-SP11 protein 
RBM25                 0.295   RNA binding motif protein 25 
ZC3H13                0.290   zinc finger CCCH-type containing 13 
LOC100131202          0.286   PREDICTED: hypothetical protein 
LOC100286959          0.286   PREDICTED: hypothetical protein XP_002343921 
SFRS12                0.286   splicing factor, arginine/serine-rich 12 isoform a ...
SFRS12                0.286   splicing factor, arginine/serine-rich 12 isoform b [...
TCHH                  0.281   trichohyalin 
LOC100288837          0.272   PREDICTED: hypothetical protein XP_002343931, parti...
LOC100131202          0.272   PREDICTED: hypothetical protein 
LOC100134067          0.253   PREDICTED: hypothetical protein 
CHAF1A                0.253   chromatin assembly factor 1, subunit A (p150) 
INCENP                0.249   inner centromere protein antigens 135/155kDa isofor...
INCENP                0.249   inner centromere protein antigens 135/155kDa isofor...
LOC645202             0.249   PREDICTED: hypothetical protein LOC645202 
LOC100289089          0.249   PREDICTED: hypothetical protein XP_002343359 
FAM133A               0.244   hypothetical protein LOC286499 
LOC727832             0.244   golgi autoantigen, golgin subfamily a-like 
CROP                  0.240   cisplatin resistance-associated overexpressed protei...
CROP                  0.240   cisplatin resistance-associated overexpressed protei...
BAT2D1                0.240   HBxAg transactivated protein 2 
LOC283685             0.240   PREDICTED: golgi autoantigen, golgin subfamily a-li...
ATRX                  0.240   transcriptional regulator ATRX isoform 2 
ATRX                  0.240   transcriptional regulator ATRX isoform 1 
LOC100133698          0.240   PREDICTED: hypothetical protein 
LOC440243             0.240   PREDICTED: Putative golgin subfamily A member 6-lik...
EIF5B                 0.240   eukaryotic translation initiation factor 5B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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