Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SPEF2 Sequence: fasta or formatted (1822aa) NCBI GI: 145699133
Description:

KPL2 protein isoform 1

Not currently referenced in the text

Other entries for this name:
alt prot {514aa} KPL2 protein isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6        120           3
 C cysteine            0.5         10           1
 D aspartate           6.0        110           2
 E glutamate          11.1        203           3
 F phenylalanine       3.8         69           3
 G glycine             3.0         54           2
 H histidine           2.1         39           1
 I isoleucine          5.7        103           2
 K lysine              9.5        173           4
 L leucine            10.5        192           2
 M methionine          2.2         40           2
 N asparagine          4.1         75           2
 P proline             5.7        103           3
 Q glutamine           5.9        107           2
 R arginine            4.6         84           3
 S serine              5.8        105           2
 T threonine           5.1         93           3
 V valine              4.8         87           2
 W tryptophan          1.0         19           1
 Y tyrosine            2.0         36           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   KPL2 protein isoform 1 
SPEF2                 0.271   KPL2 protein isoform 2 
LOC645202             0.010   PREDICTED: hypothetical protein LOC645202 
TCHH                  0.009   trichohyalin 
LOC727832             0.009   golgi autoantigen, golgin subfamily a-like 
GOLGB1                0.009   golgi autoantigen, golgin subfamily b, macrogolgin ...
AP3D1                 0.009   adaptor-related protein complex 3, delta 1 subunit ...
MAP7D3                0.009   MAP7 domain containing 3 
INCENP                0.009   inner centromere protein antigens 135/155kDa isofor...
GOLGA4                0.008   golgi autoantigen, golgin subfamily a, 4 
INCENP                0.008   inner centromere protein antigens 135/155kDa isofor...
LOC283685             0.008   PREDICTED: golgi autoantigen, golgin subfamily a-li...
CCDC11                0.008   coiled-coil domain containing 11 
LOC440243             0.008   PREDICTED: Putative golgin subfamily A member 6-lik...
MYO6                  0.008   myosin VI 
CCDC41                0.008   NY-REN-58 antigen 
CCDC41                0.008   NY-REN-58 antigen 
KIAA1009              0.008   KIAA1009 protein 
MYO18A                0.007   myosin 18A isoform b 
MYO18A                0.007   myosin 18A isoform a 
GIGYF2                0.007   GRB10 interacting GYF protein 2 isoform c 
GIGYF2                0.007   GRB10 interacting GYF protein 2 isoform a 
GIGYF2                0.007   GRB10 interacting GYF protein 2 isoform b 
GIGYF2                0.007   GRB10 interacting GYF protein 2 isoform b 
MYH11                 0.007   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.007   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.007   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.007   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
CEP250                0.007   centrosomal protein 2 
NEFM                  0.007   neurofilament, medium polypeptide 150kDa isoform 1 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press