Guide to the Human Genome
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Name: RBM25 Sequence: fasta or formatted (843aa) NCBI GI: 55741709
Description:

RNA binding motif protein 25

Referenced in:

RNA-binding Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1         43           2
 C cysteine            0.7          6           1
 D aspartate           7.0         59           3
 E glutamate          17.6        148           6
 F phenylalanine       1.8         15           1
 G glycine             3.4         29           1
 H histidine           1.3         11           1
 I isoleucine          4.7         40           3
 K lysine             10.3         87           4
 L leucine             6.5         55           2
 M methionine          2.0         17           1
 N asparagine          2.4         20           1
 P proline             7.1         60           3
 Q glutamine           2.8         24           3
 R arginine           13.2        111           3
 S serine              5.2         44           2
 T threonine           2.8         24           3
 V valine              3.7         31           1
 W tryptophan          0.7          6           1
 Y tyrosine            1.5         13           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RNA binding motif protein 25 
LOC100286959          0.125   PREDICTED: hypothetical protein XP_002343921 
ZC3H13                0.100   zinc finger CCCH-type containing 13 
TCHH                  0.096   trichohyalin 
LOC100131202          0.095   PREDICTED: hypothetical protein 
LOC100288837          0.093   PREDICTED: hypothetical protein XP_002343931, parti...
LOC100131202          0.093   PREDICTED: hypothetical protein 
SFRS12                0.084   splicing factor, arginine/serine-rich 12 isoform a ...
SFRS12                0.084   splicing factor, arginine/serine-rich 12 isoform b [...
LOC100134067          0.081   PREDICTED: hypothetical protein 
LOC283685             0.078   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC727832             0.075   golgi autoantigen, golgin subfamily a-like 
PRPF38B               0.075   PRP38 pre-mRNA processing factor 38 (yeast) domain ...
LOC283685             0.073   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC100133599          0.073   PREDICTED: hypothetical protein 
LOC100133599          0.072   PREDICTED: hypothetical protein 
LOC440243             0.069   PREDICTED: Putative golgin subfamily A member 6-lik...
LOC283767             0.067   golgi autoantigen, golgin subfamily a-like 
DDX46                 0.066   DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 
CROP                  0.066   cisplatin resistance-associated overexpressed protei...
CROP                  0.066   cisplatin resistance-associated overexpressed protei...
CALD1                 0.065   caldesmon 1 isoform 1 
DIDO1                 0.063   death inducer-obliterator 1 isoform c 
LOC645202             0.061   PREDICTED: hypothetical protein LOC645202 
BAT2D1                0.060   HBxAg transactivated protein 2 
RSRC2                 0.056   arginine/serine-rich coiled-coil 2 isoform a 
CDC2L1                0.055   cell division cycle 2-like 1 (PITSLRE proteins) isof...
LOC400352             0.055   PREDICTED: similar to Putative golgin subfamily A m...
CDC2L1                0.054   cell division cycle 2-like 1 (PITSLRE proteins) isof...
LOC100133758          0.054   PREDICTED: hypothetical protein, partial 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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