Guide to the Human Genome
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Name: ZC3H18 Sequence: fasta or formatted (953aa) NCBI GI: 31377595
Description:

zinc finger CCCH-type containing 18

Referenced in:

Nucleus and Nucleolus

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         66           2
 C cysteine            0.4          4           1
 D aspartate           7.5         71           4
 E glutamate          12.0        114           3
 F phenylalanine       1.4         13           2
 G glycine             6.3         60           2
 H histidine           1.4         13           1
 I isoleucine          1.5         14           1
 K lysine              8.2         78           3
 L leucine             3.1         30           2
 M methionine          0.5          5           1
 N asparagine          1.8         17           1
 P proline            10.4         99           5
 Q glutamine           3.6         34           2
 R arginine           11.5        110           4
 S serine             13.9        132           5
 T threonine           3.7         35           2
 V valine              3.6         34           2
 W tryptophan          0.8          8           1
 Y tyrosine            1.7         16           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger CCCH-type containing 18 
SRRM1                 0.057   serine/arginine repetitive matrix 1 
LOC100286959          0.048   PREDICTED: hypothetical protein XP_002343921 
ZC3H13                0.047   zinc finger CCCH-type containing 13 
SRRM2                 0.046   splicing coactivator subunit SRm300 
NEFH                  0.041   neurofilament, heavy polypeptide 200kDa 
TRAF3IP1              0.040   TNF receptor-associated factor 3 interacting protein...
PRPF38B               0.039   PRP38 pre-mRNA processing factor 38 (yeast) domain ...
LOC100288837          0.039   PREDICTED: hypothetical protein XP_002343931, parti...
SFRS12                0.038   splicing factor, arginine/serine-rich 12 isoform a ...
SFRS12                0.038   splicing factor, arginine/serine-rich 12 isoform b [...
ENAH                  0.038   enabled homolog isoform a 
RBM25                 0.038   RNA binding motif protein 25 
LOC100131202          0.038   PREDICTED: hypothetical protein 
SFRS4                 0.037   splicing factor, arginine/serine-rich 4 
SCAF1                 0.037   SR-related CTD-associated factor 1 
ENAH                  0.036   enabled homolog isoform b 
BAT2D1                0.036   HBxAg transactivated protein 2 
LOC100131202          0.035   PREDICTED: hypothetical protein 
LOC100134067          0.034   PREDICTED: hypothetical protein 
LOC100133599          0.033   PREDICTED: hypothetical protein 
SON                   0.033   SON DNA-binding protein isoform F 
SON                   0.033   SON DNA-binding protein isoform B 
THRAP3                0.033   thyroid hormone receptor associated protein 3 [Homo...
NOLC1                 0.032   nucleolar and coiled-body phosphoprotein 1 
NKTR                  0.032   natural killer-tumor recognition sequence 
LOC100133599          0.032   PREDICTED: hypothetical protein 
EIF4B                 0.032   eukaryotic translation initiation factor 4B 
MED1                  0.031   mediator complex subunit 1 
ACIN1                 0.031   apoptotic chromatin condensation inducer 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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