Guide to the Human Genome
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Name: MPP6 Sequence: fasta or formatted (540aa) NCBI GI: 21361598
Description:

membrane protein, palmitoylated 6

Referenced in:

PDZ Domain

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         30           2
 C cysteine            0.9          5           1
 D aspartate           5.6         30           1
 E glutamate           8.7         47           2
 F phenylalanine       3.5         19           1
 G glycine             5.7         31           2
 H histidine           2.4         13           1
 I isoleucine          7.8         42           3
 K lysine              7.4         40           5
 L leucine            10.0         54           2
 M methionine          2.0         11           2
 N asparagine          5.7         31           2
 P proline             5.0         27           2
 Q glutamine           3.7         20           2
 R arginine            5.0         27           2
 S serine              5.7         31           2
 T threonine           4.6         25           2
 V valine              7.0         38           2
 W tryptophan          0.9          5           2
 Y tyrosine            2.6         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   membrane protein, palmitoylated 6 
MPP2                  0.716   palmitoylated membrane protein 2 
CASK                  0.370   calcium/calmodulin-dependent serine protein kinase ...
CASK                  0.362   calcium/calmodulin-dependent serine protein kinase ...
CASK                  0.353   calcium/calmodulin-dependent serine protein kinase ...
MPP1                  0.315   palmitoylated membrane protein 1 
MPP5                  0.307   membrane protein, palmitoylated 5 
MPP7                  0.302   palmitoylated membrane protein 7 
MPP3                  0.265   palmitoylated membrane protein 3 
DLG3                  0.139   synapse-associated protein 102 isoform a 
DLG2                  0.135   chapsyn-110 isoform 1 
DLG2                  0.135   chapsyn-110 isoform 2 
DLG2                  0.132   chapsyn-110 isoform 3 
DLG1                  0.126   discs, large homolog 1 isoform 1 
DLG3                  0.126   synapse-associated protein 102 isoform b 
DLG2                  0.126   chapsyn-110 isoform 4 
MPP4                  0.123   membrane protein, palmitoylated 4 
DLG1                  0.121   discs, large homolog 1 isoform 2 
DLG4                  0.121   post-synaptic density protein 95 isoform 1 
DLG4                  0.121   post-synaptic density protein 95 isoform 2 
GUK1                  0.078   guanylate kinase 1 isoform b 
GUK1                  0.078   guanylate kinase 1 isoform a 
GUK1                  0.078   guanylate kinase 1 isoform b 
LRGUK                 0.034   leucine-rich repeats and guanylate kinase domain con...
TJP3                  0.028   tight junction protein 3 
TJP2                  0.024   tight junction protein 2 (zona occludens 2) isoform ...
TJP2                  0.024   tight junction protein 2 (zona occludens 2) isoform ...
DLG5                  0.024   discs large homolog 5 
ITSN1                 0.024   intersectin 1 isoform ITSN-l 
MAGI3                 0.023   membrane-associated guanylate kinase-related  3 iso...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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