Guide to the Human Genome
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Name: MPP3 Sequence: fasta or formatted (585aa) NCBI GI: 21536464
Description:

palmitoylated membrane protein 3

Referenced in:

PDZ Domain

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         45           2
 C cysteine            1.2          7           1
 D aspartate           5.3         31           2
 E glutamate           9.4         55           2
 F phenylalanine       2.9         17           1
 G glycine             5.5         32           2
 H histidine           4.1         24           2
 I isoleucine          3.2         19           2
 K lysine              6.2         36           1
 L leucine            10.4         61           2
 M methionine          1.9         11           1
 N asparagine          1.9         11           1
 P proline             6.2         36           2
 Q glutamine           5.3         31           3
 R arginine            7.2         42           2
 S serine              6.7         39           2
 T threonine           3.4         20           2
 V valine              8.2         48           3
 W tryptophan          0.7          4           2
 Y tyrosine            2.7         16           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   palmitoylated membrane protein 3 
MPP7                  0.526   palmitoylated membrane protein 7 
MPP4                  0.336   membrane protein, palmitoylated 4 
MPP5                  0.289   membrane protein, palmitoylated 5 
MPP6                  0.243   membrane protein, palmitoylated 6 
CASK                  0.242   calcium/calmodulin-dependent serine protein kinase ...
CASK                  0.240   calcium/calmodulin-dependent serine protein kinase ...
MPP2                  0.236   palmitoylated membrane protein 2 
CASK                  0.233   calcium/calmodulin-dependent serine protein kinase ...
MPP1                  0.201   palmitoylated membrane protein 1 
DLG2                  0.138   chapsyn-110 isoform 3 
DLG2                  0.137   chapsyn-110 isoform 1 
DLG2                  0.137   chapsyn-110 isoform 2 
DLG3                  0.136   synapse-associated protein 102 isoform a 
DLG3                  0.135   synapse-associated protein 102 isoform b 
DLG1                  0.124   discs, large homolog 1 isoform 1 
DLG1                  0.124   discs, large homolog 1 isoform 2 
DLG2                  0.122   chapsyn-110 isoform 4 
DLG4                  0.106   post-synaptic density protein 95 isoform 1 
DLG4                  0.106   post-synaptic density protein 95 isoform 2 
GUK1                  0.072   guanylate kinase 1 isoform b 
GUK1                  0.072   guanylate kinase 1 isoform a 
GUK1                  0.072   guanylate kinase 1 isoform b 
LRGUK                 0.035   leucine-rich repeats and guanylate kinase domain con...
DLG5                  0.031   discs large homolog 5 
PARD6A                0.027   par-6 partitioning defective 6 homolog alpha isoform...
PARD6A                0.027   par-6 partitioning defective 6 homolog alpha isoform ...
PARD6B                0.026   PAR-6 beta 
PARD6G                0.024   PAR-6 gamma protein 
GRIP1                 0.024   glutamate receptor interacting protein 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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