Guide to the Human Genome
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Name: UMODL1 Sequence: fasta or formatted (1318aa) NCBI GI: 145580584
Description:

uromodulin-like 1 isoform 1 precursor

Referenced in:

Kidney

Other entries for this name:
alt prot [1446aa] uromodulin-like 1 isoform 2 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         85           2
 C cysteine            3.3         44           2
 D aspartate           3.6         48           2
 E glutamate           6.0         79           2
 F phenylalanine       3.1         41           2
 G glycine             7.2         95           3
 H histidine           2.2         29           2
 I isoleucine          3.6         48           2
 K lysine              2.6         34           1
 L leucine             9.8        129           3
 M methionine          1.8         24           1
 N asparagine          4.4         58           2
 P proline             6.1         80           2
 Q glutamine           4.5         59           2
 R arginine            5.3         70           2
 S serine              9.2        121           2
 T threonine           7.6        100           2
 V valine              8.8        116           3
 W tryptophan          1.6         21           1
 Y tyrosine            2.8         37           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   uromodulin-like 1 isoform 1 precursor 
UMODL1                0.515   uromodulin-like 1 isoform 2 precursor 
UMOD                  0.031   uromodulin precursor 
UMOD                  0.031   uromodulin precursor 
GP2                   0.023   zymogen granule membrane glycoprotein 2 isoform 2 [...
GP2                   0.023   zymogen granule membrane glycoprotein 2 isoform 1 [...
GP2                   0.023   zymogen granule membrane glycoprotein 2 isoform 4 [...
GP2                   0.023   zymogen granule membrane glycoprotein 2 isoform 3 [...
TECTA                 0.017   tectorin alpha precursor 
OIT3                  0.016   oncoprotein-induced transcript 3 
TECTB                 0.015   tectorin beta 
CUZD1                 0.012   CUB and zona pellucida-like domains 1 
ZP4                   0.012   zona pellucida glycoprotein 4 preproprotein 
ZPLD1                 0.011   zona pellucida-like domain containing 1 
LOC100291777          0.011   PREDICTED: similar to DMBT1 isoform 1 
LOC100291777          0.011   PREDICTED: similar to DMBT1 isoform 2 
DMBT1                 0.011   deleted in malignant brain tumors 1 isoform c precu...
DMBT1                 0.011   deleted in malignant brain tumors 1 isoform b precu...
DMBT1                 0.011   deleted in malignant brain tumors 1 isoform a precu...
TGFBR3                0.009   transforming growth factor, beta receptor III 
FBLN5                 0.008   fibulin 5 precursor 
FBN1                  0.008   fibrillin 1 precursor 
FBN3                  0.008   fibrillin 3 precursor 
FBN2                  0.007   fibrillin 2 precursor 
NOTCH4                0.007   notch4 preproprotein 
CD97                  0.007   CD97 antigen isoform 2 precursor 
EMR2                  0.007   egf-like module containing, mucin-like, hormone rece...
EMR2                  0.007   egf-like module containing, mucin-like, hormone rece...
PTPRH                 0.007   protein tyrosine phosphatase, receptor type, H isof...
ZP2                   0.006   zona pellucida glycoprotein 2 preproprotein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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