Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: OIT3 Sequence: fasta or formatted (545aa) NCBI GI: 22749297
Description:

oncoprotein-induced transcript 3

Referenced in:

Kidney
Liver

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.1         17           1
 C cysteine            7.2         39           2
 D aspartate           5.5         30           2
 E glutamate           6.8         37           2
 F phenylalanine       4.0         22           1
 G glycine             9.2         50           2
 H histidine           3.7         20           1
 I isoleucine          4.0         22           2
 K lysine              3.5         19           1
 L leucine             8.6         47           3
 M methionine          0.9          5           1
 N asparagine          5.3         29           3
 P proline             5.7         31           2
 Q glutamine           2.6         14           1
 R arginine            4.8         26           2
 S serine              7.2         39           2
 T threonine           6.1         33           2
 V valine              8.1         44           2
 W tryptophan          0.9          5           1
 Y tyrosine            2.9         16           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   oncoprotein-induced transcript 3 
GP2                   0.146   zymogen granule membrane glycoprotein 2 isoform 2 [...
UMOD                  0.144   uromodulin precursor 
UMOD                  0.144   uromodulin precursor 
GP2                   0.135   zymogen granule membrane glycoprotein 2 isoform 1 [...
MATN2                 0.071   matrilin 2 isoform b precursor 
MATN2                 0.071   matrilin 2 isoform a precursor 
SCUBE1                0.066   signal peptide, CUB domain, EGF-like 1 
SCUBE2                0.066   CEGP1 protein 
FBN3                  0.063   fibrillin 3 precursor 
EGF                   0.061   epidermal growth factor (beta-urogastrone) 
SCUBE3                0.061   signal peptide, CUB domain, EGF-like 3 
FBLN5                 0.059   fibulin 5 precursor 
LOC100291777          0.059   PREDICTED: similar to DMBT1 isoform 1 
LOC100291777          0.059   PREDICTED: similar to DMBT1 isoform 2 
DMBT1                 0.059   deleted in malignant brain tumors 1 isoform c precu...
DMBT1                 0.059   deleted in malignant brain tumors 1 isoform b precu...
DMBT1                 0.059   deleted in malignant brain tumors 1 isoform a precu...
MEGF6                 0.059   EGF-like-domain, multiple 3 
FBN2                  0.058   fibrillin 2 precursor 
CUZD1                 0.058   CUB and zona pellucida-like domains 1 
GP2                   0.058   zymogen granule membrane glycoprotein 2 isoform 4 [...
GP2                   0.058   zymogen granule membrane glycoprotein 2 isoform 3 [...
FBN1                  0.056   fibrillin 1 precursor 
MATN3                 0.056   matrilin 3 precursor 
TECTA                 0.053   tectorin alpha precursor 
EFEMP1                0.052   EGF-containing fibulin-like extracellular matrix pro...
EFEMP1                0.052   EGF-containing fibulin-like extracellular matrix pro...
EFEMP1                0.052   EGF-containing fibulin-like extracellular matrix prot...
FBLN2                 0.052   fibulin 2 isoform b precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press