Guide to the Human Genome
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Name: ZPLD1 Sequence: fasta or formatted (431aa) NCBI GI: 28372569
Description:

zona pellucida-like domain containing 1

Referenced in:

Auditory and Vestibular Functions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1         22           2
 C cysteine            3.2         14           1
 D aspartate           4.6         20           2
 E glutamate           2.6         11           1
 F phenylalanine       5.1         22           1
 G glycine             7.0         30           1
 H histidine           1.6          7           1
 I isoleucine          6.3         27           2
 K lysine              2.3         10           1
 L leucine            10.9         47           5
 M methionine          2.3         10           2
 N asparagine          7.4         32           3
 P proline             5.6         24           2
 Q glutamine           3.2         14           2
 R arginine            5.3         23           2
 S serine             10.2         44           3
 T threonine           7.0         30           2
 V valine              6.3         27           2
 W tryptophan          0.7          3           1
 Y tyrosine            3.2         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zona pellucida-like domain containing 1 
TECTB                 0.076   tectorin beta 
UMOD                  0.071   uromodulin precursor 
UMOD                  0.071   uromodulin precursor 
GP2                   0.055   zymogen granule membrane glycoprotein 2 isoform 2 [...
GP2                   0.055   zymogen granule membrane glycoprotein 2 isoform 1 [...
GP2                   0.055   zymogen granule membrane glycoprotein 2 isoform 4 [...
GP2                   0.055   zymogen granule membrane glycoprotein 2 isoform 3 [...
TECTA                 0.052   tectorin alpha precursor 
UMODL1                0.034   uromodulin-like 1 isoform 1 precursor 
UMODL1                0.034   uromodulin-like 1 isoform 2 precursor 
TGFBR3                0.028   transforming growth factor, beta receptor III 
LOC100291777          0.028   PREDICTED: similar to DMBT1 isoform 1 
LOC100291777          0.028   PREDICTED: similar to DMBT1 isoform 2 
DMBT1                 0.028   deleted in malignant brain tumors 1 isoform c precu...
DMBT1                 0.028   deleted in malignant brain tumors 1 isoform b precu...
DMBT1                 0.028   deleted in malignant brain tumors 1 isoform a precu...
ZP2                   0.024   zona pellucida glycoprotein 2 preproprotein 
CUZD1                 0.022   CUB and zona pellucida-like domains 1 
ZP4                   0.020   zona pellucida glycoprotein 4 preproprotein 
APLP1                 0.009   amyloid precursor-like protein 1 isoform 2 precursor ...
APLP1                 0.009   amyloid precursor-like protein 1 isoform 1 precursor...
LOC645781             0.008   PREDICTED: similar to mCG141871 
LOC645781             0.008   PREDICTED: similar to mCG141871 
LOC645781             0.008   PREDICTED: similar to mCG141871 
UBQLN1                0.007   ubiquilin 1 isoform 2 
UBQLN1                0.007   ubiquilin 1 isoform 1 
C15orf55              0.006   nuclear protein in testis 
TEX2                  0.005   testis expressed sequence 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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