Guide to the Human Genome
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Name: TECTB Sequence: fasta or formatted (329aa) NCBI GI: 17158035
Description:

tectorin beta

Referenced in:

Auditory and Vestibular Functions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         21           2
 C cysteine            4.0         13           1
 D aspartate           3.6         12           1
 E glutamate           4.6         15           1
 F phenylalanine       6.4         21           1
 G glycine             5.5         18           2
 H histidine           3.3         11           2
 I isoleucine          5.2         17           2
 K lysine              6.4         21           2
 L leucine             9.1         30           2
 M methionine          1.5          5           2
 N asparagine          4.6         15           1
 P proline             4.6         15           2
 Q glutamine           3.6         12           1
 R arginine            3.0         10           1
 S serine              8.5         28           2
 T threonine           5.5         18           2
 V valine              8.5         28           2
 W tryptophan          1.2          4           1
 Y tyrosine            4.6         15           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tectorin beta 
ZPLD1                 0.099   zona pellucida-like domain containing 1 
UMOD                  0.084   uromodulin precursor 
UMOD                  0.084   uromodulin precursor 
TECTA                 0.082   tectorin alpha precursor 
GP2                   0.075   zymogen granule membrane glycoprotein 2 isoform 2 [...
GP2                   0.075   zymogen granule membrane glycoprotein 2 isoform 1 [...
GP2                   0.075   zymogen granule membrane glycoprotein 2 isoform 4 [...
GP2                   0.075   zymogen granule membrane glycoprotein 2 isoform 3 [...
UMODL1                0.062   uromodulin-like 1 isoform 1 precursor 
UMODL1                0.062   uromodulin-like 1 isoform 2 precursor 
CUZD1                 0.058   CUB and zona pellucida-like domains 1 
OIT3                  0.043   oncoprotein-induced transcript 3 
LOC100291777          0.041   PREDICTED: similar to DMBT1 isoform 1 
LOC100291777          0.041   PREDICTED: similar to DMBT1 isoform 2 
DMBT1                 0.041   deleted in malignant brain tumors 1 isoform c precu...
DMBT1                 0.041   deleted in malignant brain tumors 1 isoform b precu...
DMBT1                 0.041   deleted in malignant brain tumors 1 isoform a precu...
ZP4                   0.038   zona pellucida glycoprotein 4 preproprotein 
ZP1                   0.015   zona pellucida glycoprotein 1 
MS4A13                0.008   membrane-spanning 4-domains, subfamily A, member 13...
SH2D7                 0.006   SH2 domain containing 7 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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