Guide to the Human Genome
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Name: UMOD Sequence: fasta or formatted (640aa) NCBI GI: 56550049
Description:

uromodulin precursor

Referenced in:

Kidney

Other entries for this name:
alt mRNA [640aa] uromodulin precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         44           2
 C cysteine            7.5         48           2
 D aspartate           6.1         39           1
 E glutamate           4.7         30           2
 F phenylalanine       3.3         21           1
 G glycine             8.1         52           2
 H histidine           2.3         15           1
 I isoleucine          2.7         17           3
 K lysine              2.5         16           1
 L leucine             8.6         55           3
 M methionine          2.3         15           1
 N asparagine          3.9         25           2
 P proline             4.5         29           2
 Q glutamine           3.0         19           1
 R arginine            4.7         30           1
 S serine              8.6         55           2
 T threonine           8.1         52           2
 V valine              6.9         44           3
 W tryptophan          1.9         12           1
 Y tyrosine            3.4         22           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   uromodulin precursor 
UMOD                  1.000   uromodulin precursor 
GP2                   0.388   zymogen granule membrane glycoprotein 2 isoform 2 [...
GP2                   0.384   zymogen granule membrane glycoprotein 2 isoform 1 [...
GP2                   0.259   zymogen granule membrane glycoprotein 2 isoform 4 [...
GP2                   0.259   zymogen granule membrane glycoprotein 2 isoform 3 [...
TECTA                 0.141   tectorin alpha precursor 
OIT3                  0.123   oncoprotein-induced transcript 3 
FBN2                  0.065   fibrillin 2 precursor 
NELL2                 0.063   NEL-like protein 2 isoform d 
NELL2                 0.063   NEL-like protein 2 isoform c 
NELL2                 0.063   NEL-like protein 2 isoform b precursor 
NELL2                 0.063   NEL-like protein 2 isoform a 
NELL2                 0.063   NEL-like protein 2 isoform b precursor 
UMODL1                0.061   uromodulin-like 1 isoform 1 precursor 
UMODL1                0.061   uromodulin-like 1 isoform 2 precursor 
HMCN1                 0.058   hemicentin 1 
FBN1                  0.057   fibrillin 1 precursor 
SUSD1                 0.057   sushi domain containing 1 
LTBP4                 0.057   latent transforming growth factor beta binding prot...
LTBP4                 0.057   latent transforming growth factor beta binding prot...
LTBP4                 0.057   latent transforming growth factor beta binding prot...
NELL1                 0.057   nel-like 1 isoform 1 precursor 
SCUBE3                0.056   signal peptide, CUB domain, EGF-like 3 
FBN3                  0.054   fibrillin 3 precursor 
EMR1                  0.054   egf-like module containing, mucin-like, hormone rece...
NID2                  0.054   nidogen 2 precursor 
LTBP1                 0.052   latent transforming growth factor beta binding prote...
LTBP1                 0.052   latent transforming growth factor beta binding prote...
LTBP2                 0.052   latent transforming growth factor beta binding protei...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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