Guide to the Human Genome
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Name: ZP4 Sequence: fasta or formatted (540aa) NCBI GI: 10863987
Description:

zona pellucida glycoprotein 4 preproprotein

Referenced in:

Ovary, Uterus and Placenta

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         30           2
 C cysteine            4.4         24           2
 D aspartate           5.4         29           1
 E glutamate           3.7         20           2
 F phenylalanine       3.0         16           1
 G glycine             5.6         30           1
 H histidine           2.4         13           2
 I isoleucine          3.3         18           1
 K lysine              3.5         19           2
 L leucine            10.7         58           3
 M methionine          1.1          6           1
 N asparagine          3.5         19           1
 P proline             8.3         45           3
 Q glutamine           4.8         26           2
 R arginine            4.6         25           3
 S serine             10.0         54           2
 T threonine           5.9         32           2
 V valine              9.1         49           2
 W tryptophan          1.7          9           1
 Y tyrosine            3.3         18           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zona pellucida glycoprotein 4 preproprotein 
ZP1                   0.265   zona pellucida glycoprotein 1 
ZP2                   0.170   zona pellucida glycoprotein 2 preproprotein 
TECTA                 0.057   tectorin alpha precursor 
LOC100291777          0.030   PREDICTED: similar to DMBT1 isoform 1 
LOC100291777          0.030   PREDICTED: similar to DMBT1 isoform 2 
DMBT1                 0.030   deleted in malignant brain tumors 1 isoform c precu...
DMBT1                 0.030   deleted in malignant brain tumors 1 isoform b precu...
DMBT1                 0.030   deleted in malignant brain tumors 1 isoform a precu...
UMODL1                0.029   uromodulin-like 1 isoform 1 precursor 
UMODL1                0.029   uromodulin-like 1 isoform 2 precursor 
CUZD1                 0.025   CUB and zona pellucida-like domains 1 
TECTB                 0.023   tectorin beta 
ZP3                   0.021   zona pellucida glycoprotein 3 isoform 1 precursor [...
GP2                   0.020   zymogen granule membrane glycoprotein 2 isoform 2 [...
GP2                   0.020   zymogen granule membrane glycoprotein 2 isoform 1 [...
GP2                   0.020   zymogen granule membrane glycoprotein 2 isoform 4 [...
GP2                   0.020   zymogen granule membrane glycoprotein 2 isoform 3 [...
ZP3                   0.019   zona pellucida glycoprotein 3 isoform 2 
ZPLD1                 0.016   zona pellucida-like domain containing 1 
TGFBR3                0.013   transforming growth factor, beta receptor III 
UMOD                  0.013   uromodulin precursor 
UMOD                  0.013   uromodulin precursor 
LOC645781             0.011   PREDICTED: similar to mCG141871 
LOC645781             0.011   PREDICTED: similar to mCG141871 
LOC645781             0.011   PREDICTED: similar to mCG141871 
DENND3                0.010   DENN/MADD domain containing 3 
MERTK                 0.007   MER receptor tyrosine kinase precursor 
GLCCI1                0.007   glucocorticoid induced transcript 1 
TFF3                  0.006   trefoil factor 3 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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