Guide to the Human Genome
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Name: TGFBR3 Sequence: fasta or formatted (851aa) NCBI GI: 56682966
Description:

transforming growth factor, beta receptor III

Referenced in:

TGF-beta Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         51           2
 C cysteine            2.0         17           1
 D aspartate           4.0         34           2
 E glutamate           7.1         60           2
 F phenylalanine       4.6         39           1
 G glycine             6.6         56           2
 H histidine           2.9         25           2
 I isoleucine          5.9         50           2
 K lysine              4.8         41           2
 L leucine             8.6         73           2
 M methionine          2.4         20           2
 N asparagine          4.9         42           2
 P proline             8.0         68           2
 Q glutamine           3.9         33           2
 R arginine            3.2         27           2
 S serine              9.4         80           4
 T threonine           5.4         46           2
 V valine              7.2         61           2
 W tryptophan          1.1          9           1
 Y tyrosine            2.2         19           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transforming growth factor, beta receptor III 
LOC645781             0.040   PREDICTED: similar to mCG141871 
LOC645781             0.040   PREDICTED: similar to mCG141871 
LOC645781             0.040   PREDICTED: similar to mCG141871 
ENG                   0.036   endoglin isoform 1 precursor 
CUZD1                 0.021   CUB and zona pellucida-like domains 1 
LOC100291777          0.018   PREDICTED: similar to DMBT1 isoform 1 
LOC100291777          0.018   PREDICTED: similar to DMBT1 isoform 2 
DMBT1                 0.018   deleted in malignant brain tumors 1 isoform c precu...
DMBT1                 0.018   deleted in malignant brain tumors 1 isoform b precu...
DMBT1                 0.018   deleted in malignant brain tumors 1 isoform a precu...
ENG                   0.018   endoglin isoform 2 precursor 
OIT3                  0.016   oncoprotein-induced transcript 3 
UMODL1                0.015   uromodulin-like 1 isoform 1 precursor 
UMODL1                0.015   uromodulin-like 1 isoform 2 precursor 
ZPLD1                 0.014   zona pellucida-like domain containing 1 
UMOD                  0.010   uromodulin precursor 
UMOD                  0.010   uromodulin precursor 
ZP4                   0.008   zona pellucida glycoprotein 4 preproprotein 
ZP2                   0.008   zona pellucida glycoprotein 2 preproprotein 
SYP                   0.006   synaptophysin 
GP2                   0.006   zymogen granule membrane glycoprotein 2 isoform 2 [...
GP2                   0.006   zymogen granule membrane glycoprotein 2 isoform 1 [...
GP2                   0.006   zymogen granule membrane glycoprotein 2 isoform 4 [...
GP2                   0.006   zymogen granule membrane glycoprotein 2 isoform 3 [...
COL4A1                0.005   alpha 1 type IV collagen preproprotein 
COL9A1                0.005   alpha 1 type IX collagen isoform 1 precursor 
COL9A1                0.005   alpha 1 type IX collagen isoform 2 precursor 
SYNPR                 0.005   synaptoporin isoform 1 
SYNPR                 0.005   synaptoporin isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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