Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: EPHA6 Sequence: fasta or formatted (334aa) NCBI GI: 27734955
Description:

EPH receptor A6 isoform b

Referenced in:

Ephrins and Ephrin Receptors

Other entries for this name:
alt prot [1130aa] EPH receptor A6 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         24           2
 C cysteine            1.5          5           1
 D aspartate           5.4         18           2
 E glutamate           5.4         18           2
 F phenylalanine       5.4         18           2
 G glycine             8.4         28           3
 H histidine           2.7          9           1
 I isoleucine          7.2         24           2
 K lysine              5.1         17           1
 L leucine             9.6         32           2
 M methionine          3.0         10           1
 N asparagine          3.0         10           1
 P proline             5.4         18           2
 Q glutamine           3.0         10           1
 R arginine            6.9         23           2
 S serine              6.0         20           1
 T threonine           4.8         16           3
 V valine              6.6         22           2
 W tryptophan          0.9          3           1
 Y tyrosine            2.7          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   EPH receptor A6 isoform b 
EPHA6                 0.878   EPH receptor A6 isoform a 
EPHA5                 0.492   ephrin receptor EphA5 isoform b precursor 
EPHA3                 0.483   ephrin receptor EphA3 isoform a precursor 
EPHA7                 0.483   ephrin receptor EphA7 
EPHA5                 0.478   ephrin receptor EphA5 isoform a precursor 
EPHA4                 0.455   ephrin receptor EphA4 
EPHB2                 0.414   ephrin receptor EphB2 isoform 2 precursor 
EPHB2                 0.408   ephrin receptor EphB2 isoform 1 precursor 
EPHB1                 0.408   ephrin receptor EphB1 precursor 
EPHB3                 0.400   ephrin receptor EphB3 precursor 
EPHA8                 0.400   ephrin receptor EphA8 isoform 1 precursor 
EPHB4                 0.386   EPH receptor B4 precursor 
EPHA2                 0.369   ephrin receptor EphA2 
EPHA1                 0.258   ephrin receptor EphA1 
EPHA10                0.254   EPH receptor A10 isofom 3 
EPHB6                 0.246   ephrin receptor EphB6 precursor 
PTK2                  0.132   PTK2 protein tyrosine kinase 2 isoform b 
PTK2                  0.132   PTK2 protein tyrosine kinase 2 isoform a 
FRK                   0.131   fyn-related kinase 
TXK                   0.131   TXK tyrosine kinase 
TEC                   0.129   tec protein tyrosine kinase 
SRC                   0.128   proto-oncogene tyrosine-protein kinase SRC 
SRC                   0.128   proto-oncogene tyrosine-protein kinase SRC 
YES1                  0.128   viral oncogene yes-1 homolog 1 
LCK                   0.126   lymphocyte-specific protein tyrosine kinase precurs...
LCK                   0.126   lymphocyte-specific protein tyrosine kinase precurs...
LYN                   0.126   Yamaguchi sarcoma viral (v-yes-1) oncogene homolog ...
LYN                   0.126   Yamaguchi sarcoma viral (v-yes-1) oncogene homolog is...
ITK                   0.126   IL2-inducible T-cell kinase 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press