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Search of human proteins with 109689699
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|109689699 transmembrane protein 80 isoform 2 [Homo sapiens]
(168 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|109689699 transmembrane protein 80 isoform 2 [Homo sapiens] 329 8e-91
gi|109689697 transmembrane protein 80 isoform 1 [Homo sapiens] 306 7e-84
gi|115387120 transmembrane protein 216 [Homo sapiens] 63 1e-10
gi|217416409 transmembrane protein 17 [Homo sapiens] 52 2e-07
gi|29725635 otopetrin 1 [Homo sapiens] 33 0.15
gi|228008400 synaptotagmin binding, cytoplasmic RNA interacting ... 30 0.97
gi|228008398 synaptotagmin binding, cytoplasmic RNA interacting ... 30 0.97
gi|228008396 synaptotagmin binding, cytoplasmic RNA interacting ... 30 0.97
gi|228008295 synaptotagmin binding, cytoplasmic RNA interacting ... 30 0.97
gi|228008293 synaptotagmin binding, cytoplasmic RNA interacting ... 30 0.97
gi|228008291 synaptotagmin binding, cytoplasmic RNA interacting ... 30 0.97
gi|95147559 ankyrin repeat domain 43 [Homo sapiens] 30 1.3
gi|239758151 PREDICTED: hypothetical protein XP_002346314 [Homo ... 29 1.7
gi|239752632 PREDICTED: hypothetical protein XP_002347697 [Homo ... 29 1.7
gi|11321642 bromodomain containing protein 1 [Homo sapiens] 29 2.2
gi|24308350 hypothetical protein LOC88745 [Homo sapiens] 29 2.2
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 28 2.8
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens] 28 2.8
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 28 2.8
gi|205360983 potassium channel, subfamily K, member 16 isoform 3... 28 2.8
gi|205360973 potassium channel, subfamily K, member 16 isoform 4... 28 2.8
gi|205360971 potassium channel, subfamily K, member 16 isoform 1... 28 2.8
gi|14149764 potassium channel, subfamily K, member 16 isoform 2 ... 28 2.8
gi|23397648 phosphatidylinositol glycan anchor biosynthesis, cla... 28 2.8
gi|145701009 acetylcholinesterase collagen-like tail subunit iso... 28 3.7
gi|153792393 G protein-coupled receptor 137C [Homo sapiens] 28 3.7
gi|162138911 IQ motif and Sec7 domain 2 isoform1 [Homo sapiens] 28 3.7
gi|11545887 neuropeptide FF receptor 1 [Homo sapiens] 28 4.8
gi|55741655 anoctamin 8 [Homo sapiens] 27 6.3
gi|239757533 PREDICTED: ankyrin repeat domain 60 [Homo sapiens] 27 6.3
>gi|109689699 transmembrane protein 80 isoform 2 [Homo sapiens]
Length = 168
Score = 329 bits (843), Expect = 8e-91
Identities = 168/168 (100%), Positives = 168/168 (100%)
Query: 1 MAEGARARGPRGCRDRDGPAGGAGKMAAPRRGRGSSTVLSSVPLQMLFYLSGTYYALYFL 60
MAEGARARGPRGCRDRDGPAGGAGKMAAPRRGRGSSTVLSSVPLQMLFYLSGTYYALYFL
Sbjct: 1 MAEGARARGPRGCRDRDGPAGGAGKMAAPRRGRGSSTVLSSVPLQMLFYLSGTYYALYFL 60
Query: 61 ATLLMITYKSQVFSYPHRYLVLDLALLFLMGILEAVRLYLGTRGNLTEAERPLAASLALT 120
ATLLMITYKSQVFSYPHRYLVLDLALLFLMGILEAVRLYLGTRGNLTEAERPLAASLALT
Sbjct: 61 ATLLMITYKSQVFSYPHRYLVLDLALLFLMGILEAVRLYLGTRGNLTEAERPLAASLALT 120
Query: 121 AGTALLSAHFLLWQALVLWADWALSATLLALHGLEAVLQVVAIAAFTR 168
AGTALLSAHFLLWQALVLWADWALSATLLALHGLEAVLQVVAIAAFTR
Sbjct: 121 AGTALLSAHFLLWQALVLWADWALSATLLALHGLEAVLQVVAIAAFTR 168
>gi|109689697 transmembrane protein 80 isoform 1 [Homo sapiens]
Length = 160
Score = 306 bits (783), Expect = 7e-84
Identities = 160/168 (95%), Positives = 160/168 (95%), Gaps = 8/168 (4%)
Query: 1 MAEGARARGPRGCRDRDGPAGGAGKMAAPRRGRGSSTVLSSVPLQMLFYLSGTYYALYFL 60
MAEGARARGPRGCRDRDGPAGGAG RGSSTVLSSVPLQMLFYLSGTYYALYFL
Sbjct: 1 MAEGARARGPRGCRDRDGPAGGAG--------RGSSTVLSSVPLQMLFYLSGTYYALYFL 52
Query: 61 ATLLMITYKSQVFSYPHRYLVLDLALLFLMGILEAVRLYLGTRGNLTEAERPLAASLALT 120
ATLLMITYKSQVFSYPHRYLVLDLALLFLMGILEAVRLYLGTRGNLTEAERPLAASLALT
Sbjct: 53 ATLLMITYKSQVFSYPHRYLVLDLALLFLMGILEAVRLYLGTRGNLTEAERPLAASLALT 112
Query: 121 AGTALLSAHFLLWQALVLWADWALSATLLALHGLEAVLQVVAIAAFTR 168
AGTALLSAHFLLWQALVLWADWALSATLLALHGLEAVLQVVAIAAFTR
Sbjct: 113 AGTALLSAHFLLWQALVLWADWALSATLLALHGLEAVLQVVAIAAFTR 160
>gi|115387120 transmembrane protein 216 [Homo sapiens]
Length = 87
Score = 62.8 bits (151), Expect = 1e-10
Identities = 33/82 (40%), Positives = 56/82 (68%), Gaps = 1/82 (1%)
Query: 86 LLFLMGILEAVRLYLGTRGNLTEAERPLAASLALTAGTALLSAHFLLWQALVLWADWALS 145
LL +GI E +RL+ GT+GNL + + PL+ S+ALT +A++++++LL Q VL + ++
Sbjct: 2 LLLYLGI-EVIRLFFGTKGNLCQRKMPLSISVALTFPSAMMASYYLLLQTYVLRLEAIMN 60
Query: 146 ATLLALHGLEAVLQVVAIAAFT 167
LL G E +L+V+ +AAF+
Sbjct: 61 GILLFFCGSELLLEVLTLAAFS 82
>gi|217416409 transmembrane protein 17 [Homo sapiens]
Length = 198
Score = 52.4 bits (124), Expect = 2e-07
Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 11/119 (9%)
Query: 15 DRDGPAGGAGKMAAPRRGRGSSTVLSSVPLQMLFYLSGTYYALYFLATLLMITYKSQVFS 74
+R GP G + ++SS+ LQM Y + Y+ L+++++++M+ K +
Sbjct: 23 NRTGPESNEGP---------ENEMVSSLALQMSLYFNTYYFPLWWVSSIMMLHMKYSIL- 72
Query: 75 YPHRYLVLDLALLFLMGILEAVRLYLGTRGNLTEAERPLAASLALTAGTALLSAHFLLW 133
P Y + + ++ L+ ++EA+RLYLG GNL E LA L+ L FLL+
Sbjct: 73 -PDYYKFIVITVIILITLIEAIRLYLGYVGNLQEKVPELAGFWLLSLLLQLPLILFLLF 130
>gi|29725635 otopetrin 1 [Homo sapiens]
Length = 612
Score = 32.7 bits (73), Expect = 0.15
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 2 AEGARARGPRGCRDRDGPAGGAGKMAAPRRGRGSSTVLSSVPLQMLFYLSGTYYALYFLA 61
A A + GP C A + + APRRG V +SVP ++ LS Y + F+A
Sbjct: 17 ASVAGSSGPAACSPPSSSAPRSPESPAPRRGG----VRASVPQKLAEMLSSQYGLIVFVA 72
Query: 62 TLLMI 66
LL++
Sbjct: 73 GLLLL 77
>gi|228008400 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 6 [Homo sapiens]
Length = 562
Score = 30.0 bits (66), Expect = 0.97
Identities = 17/30 (56%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Query: 4 GARARGPRGCRDRDGPAGGAGKMAAPRRGR 33
GAR RG RG R G A G+ AAP RGR
Sbjct: 494 GARGRGGRGAR---GAAPSRGRGAAPPRGR 520
>gi|228008398 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 3 [Homo sapiens]
Length = 527
Score = 30.0 bits (66), Expect = 0.97
Identities = 17/30 (56%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Query: 4 GARARGPRGCRDRDGPAGGAGKMAAPRRGR 33
GAR RG RG R G A G+ AAP RGR
Sbjct: 459 GARGRGGRGAR---GAAPSRGRGAAPPRGR 485
>gi|228008396 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 2 [Homo sapiens]
Length = 464
Score = 30.0 bits (66), Expect = 0.97
Identities = 17/30 (56%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Query: 4 GARARGPRGCRDRDGPAGGAGKMAAPRRGR 33
GAR RG RG R G A G+ AAP RGR
Sbjct: 396 GARGRGGRGAR---GAAPSRGRGAAPPRGR 422
>gi|228008295 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 4 [Homo sapiens]
Length = 588
Score = 30.0 bits (66), Expect = 0.97
Identities = 17/30 (56%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Query: 4 GARARGPRGCRDRDGPAGGAGKMAAPRRGR 33
GAR RG RG R G A G+ AAP RGR
Sbjct: 459 GARGRGGRGAR---GAAPSRGRGAAPPRGR 485
>gi|228008293 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 5 [Homo sapiens]
Length = 561
Score = 30.0 bits (66), Expect = 0.97
Identities = 17/30 (56%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Query: 4 GARARGPRGCRDRDGPAGGAGKMAAPRRGR 33
GAR RG RG R G A G+ AAP RGR
Sbjct: 494 GARGRGGRGAR---GAAPSRGRGAAPPRGR 520
>gi|228008291 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 1 [Homo sapiens]
Length = 623
Score = 30.0 bits (66), Expect = 0.97
Identities = 17/30 (56%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Query: 4 GARARGPRGCRDRDGPAGGAGKMAAPRRGR 33
GAR RG RG R G A G+ AAP RGR
Sbjct: 494 GARGRGGRGAR---GAAPSRGRGAAPPRGR 520
>gi|95147559 ankyrin repeat domain 43 [Homo sapiens]
Length = 549
Score = 29.6 bits (65), Expect = 1.3
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 9 GPRGCRDRDGPAGGAGKMAAPRRGRGSSTVLSSVPLQMLFYLS 51
G RG + D GG+G +AA R + ++T+LSS L L+
Sbjct: 442 GLRGTTEPDATGGGSGSLAARRPVQVAATILSSTTSAFLGVLA 484
>gi|239758151 PREDICTED: hypothetical protein XP_002346314 [Homo
sapiens]
Length = 321
Score = 29.3 bits (64), Expect = 1.7
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 1 MAEGARARGPRGCRDRDGPAGGAGKMAAPRRGRGSST 37
+++ A G R CR R GG GK PRRG+ ++T
Sbjct: 126 LSQDASRSGSRVCRSRPQTRGGGGK--KPRRGQKAAT 160
>gi|239752632 PREDICTED: hypothetical protein XP_002347697 [Homo
sapiens]
Length = 231
Score = 29.3 bits (64), Expect = 1.7
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 1 MAEGARARGPRGCRDRDGPAGGAGKMAAPRRGRGSST 37
+++ A G R CR R GG GK PRRG+ ++T
Sbjct: 126 LSQDASRSGSRVCRSRPQTRGGGGK--KPRRGQKAAT 160
>gi|11321642 bromodomain containing protein 1 [Homo sapiens]
Length = 1058
Score = 28.9 bits (63), Expect = 2.2
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 12 GCRDRDGPAGGAGKMAAPRRGRGSSTVLSS 41
G R P GG G+ A PRR S + +SS
Sbjct: 829 GARSEQEPGGGLGRKATPRRRCASESSISS 858
>gi|24308350 hypothetical protein LOC88745 [Homo sapiens]
Length = 259
Score = 28.9 bits (63), Expect = 2.2
Identities = 14/27 (51%), Positives = 15/27 (55%)
Query: 4 GARARGPRGCRDRDGPAGGAGKMAAPR 30
GA AR PRG RDR+ GG A R
Sbjct: 13 GAGARRPRGARDREEDGGGLEPAAVAR 39
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 28.5 bits (62), Expect = 2.8
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 9 GPRGCRDRDGPAGGAGKMAAPRRGRGSSTVLSSVPLQ 45
GP+G R GP G AGK RRGR S +P Q
Sbjct: 589 GPQGPRGVQGPPGPAGKPG--RRGRAGSDGARGMPGQ 623
>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
Length = 1860
Score = 28.5 bits (62), Expect = 2.8
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 9 GPRGCRDRDGPAGGAGKMAAP-RRG 32
GP+G + +GP G GK AP RRG
Sbjct: 1394 GPKGSKGAEGPKGKQGKAGAPGRRG 1418
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 28.5 bits (62), Expect = 2.8
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 3 EGARA-RGPRGCRDRDGPAGGAGKMAAP 29
EGA +GPRG + GP G GKM P
Sbjct: 505 EGAEGPQGPRGLQGPHGPPGRVGKMGRP 532
>gi|205360983 potassium channel, subfamily K, member 16 isoform 3
[Homo sapiens]
Length = 294
Score = 28.5 bits (62), Expect = 2.8
Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 6/100 (6%)
Query: 33 RGSSTVLSSVPLQMLFYLSGTYYALYFLATLLMITYKSQVFSYPHRYLVLDLALLFLMGI 92
+G+ST S+ F+ +GT L T QVF + L + L ++FL +
Sbjct: 84 KGNSTNPSNWDFGSSFFFAGTVVTTIGYGNLAPSTEAGQVFCVFYALLGIPLNVIFLNHL 143
Query: 93 LEAVRLYLGT------RGNLTEAERPLAASLALTAGTALL 126
+R +L R ++ + L +L LT GT ++
Sbjct: 144 GTGLRAHLAAIERWEDRPRRSQVLQVLGLALFLTLGTLVI 183
>gi|205360973 potassium channel, subfamily K, member 16 isoform 4
[Homo sapiens]
Length = 262
Score = 28.5 bits (62), Expect = 2.8
Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 6/100 (6%)
Query: 33 RGSSTVLSSVPLQMLFYLSGTYYALYFLATLLMITYKSQVFSYPHRYLVLDLALLFLMGI 92
+G+ST S+ F+ +GT L T QVF + L + L ++FL +
Sbjct: 84 KGNSTNPSNWDFGSSFFFAGTVVTTIGYGNLAPSTEAGQVFCVFYALLGIPLNVIFLNHL 143
Query: 93 LEAVRLYLGT------RGNLTEAERPLAASLALTAGTALL 126
+R +L R ++ + L +L LT GT ++
Sbjct: 144 GTGLRAHLAAIERWEDRPRRSQVLQVLGLALFLTLGTLVI 183
>gi|205360971 potassium channel, subfamily K, member 16 isoform 1
[Homo sapiens]
Length = 322
Score = 28.5 bits (62), Expect = 2.8
Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 6/100 (6%)
Query: 33 RGSSTVLSSVPLQMLFYLSGTYYALYFLATLLMITYKSQVFSYPHRYLVLDLALLFLMGI 92
+G+ST S+ F+ +GT L T QVF + L + L ++FL +
Sbjct: 84 KGNSTNPSNWDFGSSFFFAGTVVTTIGYGNLAPSTEAGQVFCVFYALLGIPLNVIFLNHL 143
Query: 93 LEAVRLYLGT------RGNLTEAERPLAASLALTAGTALL 126
+R +L R ++ + L +L LT GT ++
Sbjct: 144 GTGLRAHLAAIERWEDRPRRSQVLQVLGLALFLTLGTLVI 183
>gi|14149764 potassium channel, subfamily K, member 16 isoform 2
[Homo sapiens]
Length = 309
Score = 28.5 bits (62), Expect = 2.8
Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 6/100 (6%)
Query: 33 RGSSTVLSSVPLQMLFYLSGTYYALYFLATLLMITYKSQVFSYPHRYLVLDLALLFLMGI 92
+G+ST S+ F+ +GT L T QVF + L + L ++FL +
Sbjct: 84 KGNSTNPSNWDFGSSFFFAGTVVTTIGYGNLAPSTEAGQVFCVFYALLGIPLNVIFLNHL 143
Query: 93 LEAVRLYLGT------RGNLTEAERPLAASLALTAGTALL 126
+R +L R ++ + L +L LT GT ++
Sbjct: 144 GTGLRAHLAAIERWEDRPRRSQVLQVLGLALFLTLGTLVI 183
>gi|23397648 phosphatidylinositol glycan anchor biosynthesis, class
O isoform 1 [Homo sapiens]
Length = 1089
Score = 28.5 bits (62), Expect = 2.8
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 89 LMGILEAVRLYLGTRGNLTEAERPLAASLALTAGTALLSAHFLLWQALVLWADWALSATL 148
L+ +L AVRL+L GNL E P+ L + G L++ + AL AD A
Sbjct: 677 LVALLAAVRLWLRRYGNLKSPEPPM---LFVRWGLPLMALGTAAYWALASGADEAPPRLR 733
Query: 149 LALHGLEAVL 158
+ + G VL
Sbjct: 734 VLVSGASMVL 743
>gi|145701009 acetylcholinesterase collagen-like tail subunit
isoform III precursor [Homo sapiens]
Length = 421
Score = 28.1 bits (61), Expect = 3.7
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 4 GARARGPRGCRDRDGPAGGAGKMAAP-RRGRGSSTVLSSVP 43
G R+ GP G + GP G G++ P R+GR + +P
Sbjct: 69 GGRSPGPPGLPGKTGPKGEKGELGRPGRKGRPGPPGVPGMP 109
>gi|153792393 G protein-coupled receptor 137C [Homo sapiens]
Length = 429
Score = 28.1 bits (61), Expect = 3.7
Identities = 38/134 (28%), Positives = 53/134 (39%), Gaps = 19/134 (14%)
Query: 5 ARARGPRGCRDRDGPAGGAGKMAAPRRGRGSSTVLSSVPLQMLFYLSGTYYALYFLATL- 63
A A P R+ P GG+G A G++ V SV L + + Y AL+ A L
Sbjct: 9 AAAAAPAAGREPSTPGGGSGGGGAVAAASGAA-VPGSVQLALSVLHALLYAALFAFAYLQ 67
Query: 64 --LMITYKSQVFSYPHRYLVLDLALLFLMGILEAVRLYLGTRGNLTEAERPLAASLALTA 121
++ Y+ + SY L L L L+ R L A L+ SL L
Sbjct: 68 LWRLLLYRERRLSYQSLCLFLCL-------------LWAALRTTLFSAAFSLSGSLPLLR 114
Query: 122 GTALLS--AHFLLW 133
A L H+LL+
Sbjct: 115 PPAHLHFFPHWLLY 128
>gi|162138911 IQ motif and Sec7 domain 2 isoform1 [Homo sapiens]
Length = 1488
Score = 28.1 bits (61), Expect = 3.7
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 9 GPRGCRDRDGPAGGAGKMAAPRRGRGSSTVLSSVPLQML 47
GPR R+R + GA + ++P G G ST S+ P L
Sbjct: 195 GPRPPRERGQLSRGASRSSSPGAGGGHSTSTSTSPATTL 233
>gi|11545887 neuropeptide FF receptor 1 [Homo sapiens]
Length = 430
Score = 27.7 bits (60), Expect = 4.8
Identities = 27/82 (32%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Query: 7 ARGPRGCRDRDGPAGGAGKMAAPRRGRGSSTVLSSVPLQMLFYLSGTYYALYFLATLLMI 66
AR R GPA G + A PR R + V+ + + LF+ T L A LL+I
Sbjct: 237 ARIARKLCQAPGPAPGGEEAADPRASRRRARVVHMLVMVALFF---TLSWLPLWALLLLI 293
Query: 67 TYKSQVFSYPHRYLVLDLALLF 88
Y S P +LV A F
Sbjct: 294 DYGQ--LSAPQLHLVTVYAFPF 313
>gi|55741655 anoctamin 8 [Homo sapiens]
Length = 1232
Score = 27.3 bits (59), Expect = 6.3
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 10 PRGCRDRDGPAGGAGKMAAPRR 31
P GC DGP G G+ AAPR+
Sbjct: 1145 PAGCWQWDGPWGCGGEGAAPRQ 1166
>gi|239757533 PREDICTED: ankyrin repeat domain 60 [Homo sapiens]
Length = 337
Score = 27.3 bits (59), Expect = 6.3
Identities = 19/51 (37%), Positives = 20/51 (39%), Gaps = 8/51 (15%)
Query: 2 AEGARARGPRG--------CRDRDGPAGGAGKMAAPRRGRGSSTVLSSVPL 44
A GARA GP G R G GA PR G S L + PL
Sbjct: 8 AGGARAAGPTGGASRLHPNAGRRSGARAGAQGCGGPRVGSADSRALPAQPL 58
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.326 0.138 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,662,492
Number of Sequences: 37866
Number of extensions: 215945
Number of successful extensions: 1897
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1791
Number of HSP's gapped (non-prelim): 124
length of query: 168
length of database: 18,247,518
effective HSP length: 95
effective length of query: 73
effective length of database: 14,650,248
effective search space: 1069468104
effective search space used: 1069468104
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.