Guide to the Human Genome
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Name: LOC100292062 Sequence: fasta or formatted (321aa) NCBI GI: 239758151
Description:

PREDICTED: hypothetical protein XP_002346314

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.7         44           4
 C cysteine            2.5          8           1
 D aspartate           1.6          5           1
 E glutamate           3.7         12           1
 F phenylalanine       0.0          0           0
 G glycine            14.3         46           4
 H histidine           1.6          5           1
 I isoleucine          0.6          2           1
 K lysine             10.6         34           2
 L leucine             8.1         26           4
 M methionine          1.2          4           1
 N asparagine          0.9          3           1
 P proline             6.2         20           2
 Q glutamine           6.2         20           2
 R arginine           13.7         44           3
 S serine              8.7         28           2
 T threonine           1.6          5           1
 V valine              3.4         11           1
 W tryptophan          0.6          2           1
 Y tyrosine            0.6          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346314 
LOC100290552          0.719   PREDICTED: hypothetical protein XP_002347697 
LOC100293129          0.610   PREDICTED: hypothetical protein 
LOC100291835          0.540   PREDICTED: hypothetical protein XP_002346266 
LOC100290780          0.472   PREDICTED: hypothetical protein XP_002348295 
LOC100287688          0.400   PREDICTED: hypothetical protein XP_002342270 
LOC100292035          0.371   PREDICTED: hypothetical protein XP_002345623 
LOC100292383          0.351   PREDICTED: hypothetical protein 
LOC100292262          0.348   PREDICTED: hypothetical protein 
LOC100292370          0.158   PREDICTED: hypothetical protein 
CDC2L5                0.047   cell division cycle 2-like 5 isoform 1 
CDC2L5                0.047   cell division cycle 2-like 5 isoform 2 
SCAF1                 0.047   SR-related CTD-associated factor 1 
HIST1H1E              0.046   histone cluster 1, H1e 
SRRM2                 0.042   splicing coactivator subunit SRm300 
ARL6IP4               0.041   SRp25 nuclear protein isoform 3 
ARL6IP4               0.039   SRp25 nuclear protein isoform 1 
SFRS4                 0.039   splicing factor, arginine/serine-rich 4 
CCDC71                0.037   coiled-coil domain containing 71 
FLJ37078              0.036   hypothetical protein LOC222183 
SFRS16                0.036   splicing factor, arginine/serine-rich 16 
HIST1H1B              0.036   histone cluster 1, H1b 
TMC2                  0.034   transmembrane cochlear-expressed protein 2 
LOC100287499          0.034   PREDICTED: hypothetical protein 
LOC100287499          0.034   PREDICTED: hypothetical protein XP_002343643 
BAHCC1                0.033   BAH domain and coiled-coil containing 1 
LOC100133599          0.031   PREDICTED: hypothetical protein 
DDX46                 0.031   DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 
BHLHE23               0.031   basic helix-loop-helix domain containing, class B, 4...
LOC100133599          0.031   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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