Guide to the Human Genome
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Name: TMEM216 Sequence: fasta or formatted (87aa) NCBI GI: 115387120
Description:

transmembrane protein 216

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9          6           2
 C cysteine            2.3          2           1
 D aspartate           1.1          1           1
 E glutamate           4.6          4           1
 F phenylalanine       6.9          6           2
 G glycine             5.7          5           1
 H histidine           0.0          0           0
 I isoleucine          6.9          6           1
 K lysine              2.3          2           1
 L leucine            23.0         20           3
 M methionine          6.9          6           2
 N asparagine          2.3          2           1
 P proline             2.3          2           1
 Q glutamine           2.3          2           1
 R arginine            4.6          4           1
 S serine              8.0          7           2
 T threonine           4.6          4           1
 V valine              4.6          4           1
 W tryptophan          0.0          0           0
 Y tyrosine            4.6          4           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transmembrane protein 216 
TMEM80                0.266   transmembrane protein 80 isoform 2 
TMEM80                0.266   transmembrane protein 80 isoform 1 
PIK3C2B               0.021   phosphoinositide-3-kinase, class 2 beta polypeptide...
DDR1                  0.014   discoidin domain receptor family, member 1 isoform c...
NLRP10                0.014   NLR family, pyrin domain containing 10 
NUP188                0.007   nucleoporin 188kDa 
TMEM17                0.007   transmembrane protein 17 
MDN1                  0.007   MDN1, midasin homolog 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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