Guide to the Human Genome
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Name: C6orf153 Sequence: fasta or formatted (259aa) NCBI GI: 24308350
Description:

hypothetical protein LOC88745

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.3         24           2
 C cysteine            0.4          1           1
 D aspartate           3.9         10           2
 E glutamate           9.3         24           2
 F phenylalanine       3.1          8           1
 G glycine             6.2         16           3
 H histidine           2.3          6           1
 I isoleucine          1.5          4           1
 K lysine             10.8         28           2
 L leucine            10.8         28           2
 M methionine          1.9          5           1
 N asparagine          3.1          8           1
 P proline             5.0         13           2
 Q glutamine           9.3         24           3
 R arginine           10.8         28           3
 S serine              5.0         13           1
 T threonine           1.5          4           1
 V valine              3.9         10           2
 W tryptophan          0.0          0           0
 Y tyrosine            1.9          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC88745 
FOXP2                 0.056   forkhead box P2 isoform I 
TCHH                  0.049   trichohyalin 
MYH14                 0.047   myosin, heavy chain 14 isoform 1 
MYH14                 0.047   myosin, heavy chain 14 isoform 2 
MYH14                 0.047   myosin, heavy chain 14 isoform 3 
FOXP2                 0.047   forkhead box P2 isoform II 
GBP1                  0.043   guanylate binding protein 1, interferon-inducible, ...
MLL2                  0.043   myeloid/lymphoid or mixed-lineage leukemia 2 
MED15                 0.043   mediator complex subunit 15 isoform a 
MED15                 0.043   mediator complex subunit 15 isoform b 
FAM50A                0.041   XAP-5 protein 
LOC100133599          0.041   PREDICTED: hypothetical protein 
MSN                   0.037   moesin 
FOXP2                 0.035   forkhead box P2 isoform III 
GIGYF2                0.035   GRB10 interacting GYF protein 2 isoform c 
GIGYF2                0.035   GRB10 interacting GYF protein 2 isoform a 
GIGYF2                0.035   GRB10 interacting GYF protein 2 isoform b 
GIGYF2                0.035   GRB10 interacting GYF protein 2 isoform b 
CROP                  0.035   cisplatin resistance-associated overexpressed protei...
CROP                  0.035   cisplatin resistance-associated overexpressed protei...
INCENP                0.035   inner centromere protein antigens 135/155kDa isofor...
INCENP                0.035   inner centromere protein antigens 135/155kDa isofor...
TOX3                  0.033   TOX high mobility group box family member 3 isoform...
TOX3                  0.033   TOX high mobility group box family member 3 isoform...
EIF3A                 0.033   eukaryotic translation initiation factor 3, subunit 1...
LOC100131202          0.033   PREDICTED: hypothetical protein 
CHAF1A                0.033   chromatin assembly factor 1, subunit A (p150) 
LOC728636             0.031   PREDICTED: similar to golgi autoantigen, golgin sub...
SFRS17A               0.031   DNA segment on chromosome X and Y (unique) 155 expre...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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