Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: KCNK16 Sequence: fasta or formatted (294aa) NCBI GI: 205360983
Description:

potassium channel, subfamily K, member 16 isoform 3

Referenced in:

Potassium Channels

Other entries for this name:
alt prot [309aa] potassium channel, subfamily K, member 16 isoform 2
alt prot [322aa] potassium channel, subfamily K, member 16 isoform 1
alt prot [262aa] potassium channel, subfamily K, member 16 isoform 4
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         23           2
 C cysteine            2.4          7           2
 D aspartate           2.7          8           1
 E glutamate           3.7         11           1
 F phenylalanine       6.5         19           3
 G glycine             9.2         27           2
 H histidine           1.7          5           1
 I isoleucine          5.4         16           1
 K lysine              2.0          6           1
 L leucine            16.0         47           3
 M methionine          1.4          4           1
 N asparagine          2.7          8           1
 P proline             5.4         16           2
 Q glutamine           4.4         13           1
 R arginine            4.4         13           2
 S serine              6.8         20           2
 T threonine           4.4         13           2
 V valine              6.8         20           2
 W tryptophan          3.1          9           1
 Y tyrosine            3.1          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   potassium channel, subfamily K, member 16 isoform 3... 
KCNK16                0.920   potassium channel, subfamily K, member 16 isoform 2 ...
KCNK16                0.744   potassium channel, subfamily K, member 16 isoform 4...
KCNK16                0.744   potassium channel, subfamily K, member 16 isoform 1...
KCNK17                0.352   potassium channel, subfamily K, member 17 isoform 1 ...
KCNK10                0.302   potassium channel, subfamily K, member 10 isoform 3 ...
KCNK10                0.302   potassium channel, subfamily K, member 10 isoform 2 ...
KCNK10                0.302   potassium channel, subfamily K, member 10 isoform 1 ...
KCNK2                 0.293   potassium channel, subfamily K, member 2 isoform b [...
KCNK2                 0.293   potassium channel, subfamily K, member 2 isoform c ...
KCNK2                 0.293   potassium channel, subfamily K, member 2 isoform a [...
KCNK5                 0.293   potassium channel, subfamily K, member 5 
KCNK17                0.289   potassium channel, subfamily K, member 17 isoform 2...
KCNK4                 0.277   TRAAK 
KCNK1                 0.225   potassium channel, subfamily K, member 1 
KCNK6                 0.224   potassium channel, subfamily K, member 6 
KCNK3                 0.191   potassium channel, subfamily K, member 3 
KCNK9                 0.184   potassium channel, subfamily K, member 9 
KCNK15                0.182   potassium family, subfamily K, member 15 
KCNK7                 0.151   potassium channel, subfamily K, member 7 isoform A [...
KCNK7                 0.144   potassium channel, subfamily K, member 7 isoform B [...
KCNK7                 0.144   potassium channel, subfamily K, member 7 isoform B [...
KCNK13                0.144   potassium channel, subfamily K, member 13 
KCNK7                 0.142   potassium channel, subfamily K, member 7 isoform C [H...
KCNK12                0.139   potassium channel, subfamily K, member 12 
KCNK18                0.066   potassium channel, subfamily K, member 18 
KCNH1                 0.029   potassium voltage-gated channel, subfamily H, member ...
KCNH1                 0.029   potassium voltage-gated channel, subfamily H, member...
KCNH5                 0.026   potassium voltage-gated channel, subfamily H, member...
KCNH5                 0.026   potassium voltage-gated channel, subfamily H, member...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press