Guide to the Human Genome
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Name: MADCAM1 Sequence: fasta or formatted (382aa) NCBI GI: 109633022
Description:

mucosal vascular addressin cell adhesion molecule 1 isoform a precursor

Referenced in:

Cardiovascular System

Other entries for this name:
alt prot [295aa] mucosal vascular addressin cell adhesion molecule 1 isoform b pre...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.9         34           2
 C cysteine            1.8          7           1
 D aspartate           4.5         17           2
 E glutamate           6.0         23           5
 F phenylalanine       1.3          5           1
 G glycine             8.4         32           2
 H histidine           2.1          8           1
 I isoleucine          1.0          4           1
 K lysine              1.3          5           1
 L leucine            12.8         49           4
 M methionine          0.5          2           1
 N asparagine          0.5          2           1
 P proline            12.3         47           2
 Q glutamine           6.0         23           2
 R arginine            5.5         21           2
 S serine              8.9         34           2
 T threonine           8.6         33           2
 V valine              7.3         28           2
 W tryptophan          1.3          5           1
 Y tyrosine            0.8          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   mucosal vascular addressin cell adhesion molecule 1... 
MADCAM1               0.558   mucosal vascular addressin cell adhesion molecule 1 ...
MUC2                  0.053   mucin 2 precursor 
VCAM1                 0.051   vascular cell adhesion molecule 1 isoform a precursor...
PRG4                  0.051   proteoglycan 4 isoform D 
PRG4                  0.051   proteoglycan 4 isoform C 
PRG4                  0.051   proteoglycan 4 isoform B 
PRG4                  0.051   proteoglycan 4 isoform A 
COL27A1               0.039   collagen, type XXVII, alpha 1 
FLJ22184              0.036   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.036   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.036   PREDICTED: hypothetical protein LOC80164 
MUC7                  0.035   mucin 7, secreted precursor 
MUC7                  0.035   mucin 7, secreted precursor 
MUC7                  0.035   mucin 7, secreted precursor 
NACA                  0.035   nascent polypeptide-associated complex alpha subuni...
C14orf174             0.032   hypothetical protein LOC161394 
KIAA0754              0.029   hypothetical protein LOC643314 
PCLO                  0.029   piccolo isoform 2 
PCLO                  0.029   piccolo isoform 1 
SYN1                  0.029   synapsin I isoform Ia 
SYN1                  0.029   synapsin I isoform Ib 
TROAP                 0.029   tastin isoform 1 
SMTN                  0.029   smoothelin isoform b 
SMTN                  0.029   smoothelin isoform c 
SMTN                  0.029   smoothelin isoform a 
PRR12                 0.028   proline rich 12 
FMN1                  0.028   formin 1 
KIAA1543              0.028   NEZHA isoform 2 
KIAA1543              0.028   NEZHA isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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