Guide to the Human Genome
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Name: TROAP Sequence: fasta or formatted (778aa) NCBI GI: 154800453
Description:

tastin isoform 1

Referenced in:

Melanoma Antigen Family

Other entries for this name:
alt prot [144aa] tastin isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         52           2
 C cysteine            3.6         28           2
 D aspartate           1.9         15           2
 E glutamate           8.0         62           2
 F phenylalanine       1.8         14           1
 G glycine             6.7         52           2
 H histidine           2.2         17           1
 I isoleucine          2.4         19           1
 K lysine              1.8         14           1
 L leucine             9.8         76           3
 M methionine          0.6          5           1
 N asparagine          1.4         11           1
 P proline            15.4        120           2
 Q glutamine           6.8         53           2
 R arginine            8.1         63           2
 S serine             10.3         80           2
 T threonine           5.7         44           2
 V valine              5.5         43           2
 W tryptophan          0.6          5           1
 Y tyrosine            0.6          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tastin isoform 1 
TROAP                 0.132   tastin isoform 2 
WIPF3                 0.027   WAS/WASL interacting protein family, member 3 [Homo...
FLJ22184              0.023   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.023   PREDICTED: hypothetical protein LOC80164 
RAPH1                 0.023   Ras association and pleckstrin homology domains 1 is...
KPRP                  0.023   keratinocyte proline-rich protein 
PRG4                  0.022   proteoglycan 4 isoform D 
PRG4                  0.022   proteoglycan 4 isoform C 
PRG4                  0.022   proteoglycan 4 isoform B 
PRG4                  0.022   proteoglycan 4 isoform A 
MLL4                  0.022   myeloid/lymphoid or mixed-lineage leukemia 4 
CREBBP                0.021   CREB binding protein isoform b 
CREBBP                0.021   CREB binding protein isoform a 
ZNF828                0.020   zinc finger protein 828 
FLJ22184              0.019   PREDICTED: hypothetical protein FLJ22184 
PCLO                  0.018   piccolo isoform 2 
PCLO                  0.018   piccolo isoform 1 
DGKK                  0.018   diacylglycerol kinase kappa 
GLTSCR1               0.018   glioma tumor suppressor candidate region gene 1 [Ho...
PRR12                 0.018   proline rich 12 
MLL2                  0.018   myeloid/lymphoid or mixed-lineage leukemia 2 
BRD4                  0.018   bromodomain-containing protein 4 isoform long 
UBN2                  0.017   ubinuclein 2 
APC2                  0.017   adenomatosis polyposis coli 2 
PTPN23                0.016   protein tyrosine phosphatase, non-receptor type 23 [...
WNK4                  0.016   WNK lysine deficient protein kinase 4 
TTN                   0.016   titin isoform N2-A 
MLXIPL                0.015   Williams Beuren syndrome chromosome region 14 isofor...
MLXIPL                0.015   Williams Beuren syndrome chromosome region 14 isofor...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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