Guide to the Human Genome
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Name: IER2 Sequence: fasta or formatted (223aa) NCBI GI: 48675811
Description:

immediate early response 2

Referenced in:

Additional Signal Responses

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.9         31           2
 C cysteine            2.2          5           2
 D aspartate           3.1          7           1
 E glutamate          10.3         23           4
 F phenylalanine       1.8          4           1
 G glycine             4.0          9           2
 H histidine           1.8          4           1
 I isoleucine          0.4          1           1
 K lysine              4.0          9           2
 L leucine             9.9         22           2
 M methionine          3.1          7           1
 N asparagine          1.3          3           1
 P proline            11.2         25           3
 Q glutamine           3.6          8           1
 R arginine            9.0         20           2
 S serine              9.4         21           3
 T threonine           3.6          8           1
 V valine              5.8         13           2
 W tryptophan          0.4          1           1
 Y tyrosine            0.9          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   immediate early response 2 
IER5                  0.138   immediate early response 5 
IER5L                 0.072   immediate early response 5-like 
SCARF2                0.038   scavenger receptor class F, member 2 isoform 1 [Homo...
SCARF2                0.038   scavenger receptor class F, member 2 isoform 2 [Homo...
SRCAP                 0.036   Snf2-related CBP activator protein 
FAM71E2               0.033   hypothetical protein LOC284418 
MLL2                  0.033   myeloid/lymphoid or mixed-lineage leukemia 2 
SHROOM2               0.033   apical protein of Xenopus-like 
JMY                   0.031   junction-mediating and regulatory protein 
LOC643355             0.031   PREDICTED: hypothetical protein 
LOC643355             0.031   PREDICTED: hypothetical protein 
MYST3                 0.029   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.029   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.029   MYST histone acetyltransferase (monocytic leukemia)...
RALGDS                0.029   ral guanine nucleotide dissociation stimulator isofo...
RALGDS                0.029   ral guanine nucleotide dissociation stimulator isof...
DTX2                  0.029   deltex 2 isoform a 
DTX2                  0.029   deltex 2 isoform a 
DTX2                  0.029   deltex 2 isoform a 
HIVEP3                0.029   human immunodeficiency virus type I enhancer bindin...
HIVEP3                0.029   human immunodeficiency virus type I enhancer bindin...
C6orf150              0.029   hypothetical protein LOC115004 
TCOF1                 0.026   Treacher Collins-Franceschetti syndrome 1 isoform e...
TCOF1                 0.026   Treacher Collins-Franceschetti syndrome 1 isoform d...
TCOF1                 0.026   Treacher Collins-Franceschetti syndrome 1 isoform a ...
TCOF1                 0.026   Treacher Collins-Franceschetti syndrome 1 isoform c ...
TCOF1                 0.026   Treacher Collins-Franceschetti syndrome 1 isoform f...
TCOF1                 0.026   Treacher Collins-Franceschetti syndrome 1 isoform b ...
MINK1                 0.024   misshapen/NIK-related kinase isoform 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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