Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 14249412
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|14249412 tripartite motif-containing 52 [Homo sapiens]
(297 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|14249412 tripartite motif-containing 52 [Homo sapiens] 629 0.0
gi|42516574 tripartite motif-containing 41 isoform 2 [Homo sapiens] 344 5e-95
gi|42516572 tripartite motif-containing 41 isoform 1 [Homo sapiens] 344 5e-95
gi|5730009 ret finger protein [Homo sapiens] 99 3e-21
gi|25777698 tripartite motif-containing 39 isoform 2 [Homo sapiens] 96 5e-20
gi|25777696 tripartite motif-containing 39 isoform 1 [Homo sapiens] 96 5e-20
gi|15208660 tripartite motif protein 21 [Homo sapiens] 92 7e-19
gi|198442878 tripartite motif-containing 17 isoform 3 [Homo sapi... 86 5e-17
gi|68160935 tripartite motif-containing 17 isoform 2 [Homo sapiens] 86 5e-17
gi|68160933 tripartite motif-containing 17 isoform 1 [Homo sapiens] 86 5e-17
gi|7705825 tripartite motif-containing 17 isoform 1 [Homo sapiens] 86 5e-17
gi|14719418 tripartite motif protein TRIM5 isoform alpha [Homo s... 83 3e-16
gi|44680122 tripartite motif-containing 7 isoform 1 [Homo sapiens] 81 1e-15
gi|16076875 tripartite motif-containing 7 isoform 4 [Homo sapiens] 81 1e-15
gi|15011941 tripartite motif protein TRIM4 isoform beta [Homo sa... 79 4e-15
gi|15011946 tripartite motif protein TRIM5 isoform delta [Homo s... 79 5e-15
gi|15011944 tripartite motif protein TRIM5 isoform gamma [Homo s... 79 5e-15
gi|37622899 ring finger protein 137 [Homo sapiens] 79 6e-15
gi|18079262 tripartite motif-containing 6 isoform 2 [Homo sapiens] 78 1e-14
gi|51477692 tripartite motif-containing 6 isoform 1 [Homo sapiens] 78 1e-14
gi|62865604 tripartite motif protein 31 [Homo sapiens] 78 1e-14
gi|51477690 tripartite motif-containing 6 and tripartite motif-c... 78 1e-14
gi|117938316 tripartite motif-containing 22 [Homo sapiens] 77 2e-14
gi|14670266 tripartite motif protein TRIM4 isoform alpha [Homo s... 77 2e-14
gi|22749269 ring finger protein 129 [Homo sapiens] 75 7e-14
gi|112421127 tripartite motif-containing 58 [Homo sapiens] 75 7e-14
gi|157426898 tripartite motif-containing 10 isoform 1 [Homo sapi... 74 2e-13
gi|157426896 tripartite motif-containing 10 isoform 2 [Homo sapi... 74 2e-13
gi|4508005 tripartite motif-containing 26 [Homo sapiens] 71 1e-12
gi|145275183 tripartite motif protein 34 isoform 3 [Homo sapiens] 70 2e-12
>gi|14249412 tripartite motif-containing 52 [Homo sapiens]
Length = 297
Score = 629 bits (1622), Expect = 0.0
Identities = 297/297 (100%), Positives = 297/297 (100%)
Query: 1 MAGYATTPSPMQTLQEEAVCAICLDYFKDPVSISCGHNFCRGCVTQLWSKEDEEDQNEEE 60
MAGYATTPSPMQTLQEEAVCAICLDYFKDPVSISCGHNFCRGCVTQLWSKEDEEDQNEEE
Sbjct: 1 MAGYATTPSPMQTLQEEAVCAICLDYFKDPVSISCGHNFCRGCVTQLWSKEDEEDQNEEE 60
Query: 61 DEWEEEEDEEAVGAMDGWDGSIREVLYRGNADEELFQDQDDDELWLGDSGITNWDNVDYM 120
DEWEEEEDEEAVGAMDGWDGSIREVLYRGNADEELFQDQDDDELWLGDSGITNWDNVDYM
Sbjct: 61 DEWEEEEDEEAVGAMDGWDGSIREVLYRGNADEELFQDQDDDELWLGDSGITNWDNVDYM 120
Query: 121 WDEEEEEEEEDQDYYLGGLRPDLRIDVYREEEILEAYDEDEDEELYPDIHPPPSLPLPGQ 180
WDEEEEEEEEDQDYYLGGLRPDLRIDVYREEEILEAYDEDEDEELYPDIHPPPSLPLPGQ
Sbjct: 121 WDEEEEEEEEDQDYYLGGLRPDLRIDVYREEEILEAYDEDEDEELYPDIHPPPSLPLPGQ 180
Query: 181 FTCPQCRKSFTRRSFRPNLQLANMVQIIRQMCPTPYRGNRSNDQGMCFKHQEALKLFCEV 240
FTCPQCRKSFTRRSFRPNLQLANMVQIIRQMCPTPYRGNRSNDQGMCFKHQEALKLFCEV
Sbjct: 181 FTCPQCRKSFTRRSFRPNLQLANMVQIIRQMCPTPYRGNRSNDQGMCFKHQEALKLFCEV 240
Query: 241 DKEAICVVCRESRSHKQHSVLPLEEVVQEYQEIKLETTLVGILQIEQESIHSKAYNQ 297
DKEAICVVCRESRSHKQHSVLPLEEVVQEYQEIKLETTLVGILQIEQESIHSKAYNQ
Sbjct: 241 DKEAICVVCRESRSHKQHSVLPLEEVVQEYQEIKLETTLVGILQIEQESIHSKAYNQ 297
>gi|42516574 tripartite motif-containing 41 isoform 2 [Homo sapiens]
Length = 518
Score = 344 bits (883), Expect = 5e-95
Identities = 178/277 (64%), Positives = 213/277 (76%), Gaps = 12/277 (4%)
Query: 1 MAGYATTPSPMQTLQEEAVCAICLDYFKDPVSISCGHNFCRGCVTQLWSKEDEEDQNE-- 58
MA A TP+P+QTLQEEAVCAICLDYF DPVSI CGHNFCR CVTQLW EDEED++E
Sbjct: 1 MAAVAMTPNPVQTLQEEAVCAICLDYFTDPVSIGCGHNFCRVCVTQLWGGEDEEDRDELD 60
Query: 59 --EEDEWEEEEDEEAVGAMDGWDGSIREVLYRGNADEELFQDQDDDELWLGDSGITNWDN 116
EE+E EEE+ EAVGA GWD +R+ Y G+ +EE+ +++++ W ++WDN
Sbjct: 61 REEEEEDGEEEEVEAVGAGAGWDTPMRDEDYEGDMEEEV-EEEEEGVFWTSGMSRSSWDN 119
Query: 117 VDYMWDEEEEEEEEDQDYYLGGLRP-DLRIDVYREEEILEAYDEDEDEELYPDIHPPPSL 175
+DY+W EEE+EEED DYYLG + DLR + +EE E +E E+E+L P + P P
Sbjct: 120 MDYVW--EEEDEEEDLDYYLGDMEEEDLRGEDEEDEE--EVLEEVEEEDLDP-VTPLPPP 174
Query: 176 PLPGQ-FTCPQCRKSFTRRSFRPNLQLANMVQIIRQMCPTPYRGNRSNDQGMCFKHQEAL 234
P P + FTCPQCRKSF RRSFRPNLQLANMVQ+IRQM PTP RG+R DQG+C KHQEAL
Sbjct: 175 PAPRRCFTCPQCRKSFPRRSFRPNLQLANMVQVIRQMHPTPGRGSRVTDQGICPKHQEAL 234
Query: 235 KLFCEVDKEAICVVCRESRSHKQHSVLPLEEVVQEYQ 271
KLFCEVD+EAICVVCRESRSHKQHSV+PLEEVVQEY+
Sbjct: 235 KLFCEVDEEAICVVCRESRSHKQHSVVPLEEVVQEYK 271
>gi|42516572 tripartite motif-containing 41 isoform 1 [Homo sapiens]
Length = 630
Score = 344 bits (883), Expect = 5e-95
Identities = 178/277 (64%), Positives = 213/277 (76%), Gaps = 12/277 (4%)
Query: 1 MAGYATTPSPMQTLQEEAVCAICLDYFKDPVSISCGHNFCRGCVTQLWSKEDEEDQNE-- 58
MA A TP+P+QTLQEEAVCAICLDYF DPVSI CGHNFCR CVTQLW EDEED++E
Sbjct: 1 MAAVAMTPNPVQTLQEEAVCAICLDYFTDPVSIGCGHNFCRVCVTQLWGGEDEEDRDELD 60
Query: 59 --EEDEWEEEEDEEAVGAMDGWDGSIREVLYRGNADEELFQDQDDDELWLGDSGITNWDN 116
EE+E EEE+ EAVGA GWD +R+ Y G+ +EE+ +++++ W ++WDN
Sbjct: 61 REEEEEDGEEEEVEAVGAGAGWDTPMRDEDYEGDMEEEV-EEEEEGVFWTSGMSRSSWDN 119
Query: 117 VDYMWDEEEEEEEEDQDYYLGGLRP-DLRIDVYREEEILEAYDEDEDEELYPDIHPPPSL 175
+DY+W EEE+EEED DYYLG + DLR + +EE E +E E+E+L P + P P
Sbjct: 120 MDYVW--EEEDEEEDLDYYLGDMEEEDLRGEDEEDEE--EVLEEVEEEDLDP-VTPLPPP 174
Query: 176 PLPGQ-FTCPQCRKSFTRRSFRPNLQLANMVQIIRQMCPTPYRGNRSNDQGMCFKHQEAL 234
P P + FTCPQCRKSF RRSFRPNLQLANMVQ+IRQM PTP RG+R DQG+C KHQEAL
Sbjct: 175 PAPRRCFTCPQCRKSFPRRSFRPNLQLANMVQVIRQMHPTPGRGSRVTDQGICPKHQEAL 234
Query: 235 KLFCEVDKEAICVVCRESRSHKQHSVLPLEEVVQEYQ 271
KLFCEVD+EAICVVCRESRSHKQHSV+PLEEVVQEY+
Sbjct: 235 KLFCEVDEEAICVVCRESRSHKQHSVVPLEEVVQEYK 271
>gi|5730009 ret finger protein [Homo sapiens]
Length = 513
Score = 99.4 bits (246), Expect = 3e-21
Identities = 45/91 (49%), Positives = 63/91 (69%), Gaps = 1/91 (1%)
Query: 182 TCPQCRKSFTRRSFRPNLQLANMVQIIRQMCPTPYRGNRSNDQGMCFKHQEALKLFCEVD 241
+CPQCR++F +R RPN LAN+ Q+++Q+ T + G+C KH+E LKL+CE D
Sbjct: 52 SCPQCRETFPQRHMRPNRHLANVTQLVKQL-RTERPSGPGGEMGVCEKHREPLKLYCEED 110
Query: 242 KEAICVVCRESRSHKQHSVLPLEEVVQEYQE 272
+ ICVVC SR H+ HSVLPLEE V+ ++E
Sbjct: 111 QMPICVVCDRSREHRGHSVLPLEEAVEGFKE 141
Score = 51.2 bits (121), Expect = 1e-06
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 9 SPMQTLQEEAVCAICLDYFKDPVSISCGHNFCRGCVTQLW 48
S + LQ+E C +CL YF +P+ + CGHN C C+ + W
Sbjct: 5 SVAECLQQETTCPVCLQYFAEPMMLDCGHNICCACLARCW 44
>gi|25777698 tripartite motif-containing 39 isoform 2 [Homo sapiens]
Length = 488
Score = 95.5 bits (236), Expect = 5e-20
Identities = 49/118 (41%), Positives = 72/118 (61%), Gaps = 4/118 (3%)
Query: 177 LPGQFTCPQCRKSFTRRSFRPNLQLANMVQIIRQMCPTPYRGNRSNDQGMCFKHQEALKL 236
L F CP CRK+ RS RPN QL +MV+I +Q+ + D+ +C +H EAL L
Sbjct: 60 LERDFPCPVCRKTSRYRSLRPNRQLGSMVEIAKQLQAVK---RKIRDESLCPQHHEALSL 116
Query: 237 FCEVDKEAICVVCRESRSHKQHSVLPLEEVVQEYQEIKLETTLVGILQIEQESIHSKA 294
FC D+EA+C++C S +H+ H+V+PL++ QEY+E KL+ L + Q QE K+
Sbjct: 117 FCYEDQEAVCLICAISHTHRAHTVVPLDDATQEYKE-KLQKCLEPLEQKLQEITRCKS 173
Score = 65.1 bits (157), Expect = 7e-11
Identities = 24/47 (51%), Positives = 35/47 (74%)
Query: 2 AGYATTPSPMQTLQEEAVCAICLDYFKDPVSISCGHNFCRGCVTQLW 48
A A+T + ++ LQ EA C++CL+Y K+PV I CGHNFC+ C+T+ W
Sbjct: 11 ASAASTAAALENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWW 57
>gi|25777696 tripartite motif-containing 39 isoform 1 [Homo sapiens]
Length = 518
Score = 95.5 bits (236), Expect = 5e-20
Identities = 49/118 (41%), Positives = 72/118 (61%), Gaps = 4/118 (3%)
Query: 177 LPGQFTCPQCRKSFTRRSFRPNLQLANMVQIIRQMCPTPYRGNRSNDQGMCFKHQEALKL 236
L F CP CRK+ RS RPN QL +MV+I +Q+ + D+ +C +H EAL L
Sbjct: 60 LERDFPCPVCRKTSRYRSLRPNRQLGSMVEIAKQLQAVK---RKIRDESLCPQHHEALSL 116
Query: 237 FCEVDKEAICVVCRESRSHKQHSVLPLEEVVQEYQEIKLETTLVGILQIEQESIHSKA 294
FC D+EA+C++C S +H+ H+V+PL++ QEY+E KL+ L + Q QE K+
Sbjct: 117 FCYEDQEAVCLICAISHTHRAHTVVPLDDATQEYKE-KLQKCLEPLEQKLQEITRCKS 173
Score = 65.1 bits (157), Expect = 7e-11
Identities = 24/47 (51%), Positives = 35/47 (74%)
Query: 2 AGYATTPSPMQTLQEEAVCAICLDYFKDPVSISCGHNFCRGCVTQLW 48
A A+T + ++ LQ EA C++CL+Y K+PV I CGHNFC+ C+T+ W
Sbjct: 11 ASAASTAAALENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWW 57
>gi|15208660 tripartite motif protein 21 [Homo sapiens]
Length = 475
Score = 91.7 bits (226), Expect = 7e-19
Identities = 49/110 (44%), Positives = 67/110 (60%), Gaps = 5/110 (4%)
Query: 179 GQFTCPQCRKSFTRRSFRPNLQLANMVQIIRQMCPTPYRGNRSNDQGMCFKHQEALKLFC 238
G CP CR+ F ++ RPN QLANMV ++++ G + C H E L LFC
Sbjct: 47 GGSVCPVCRQRFLLKNLRPNRQLANMVNNLKEISQEAREGTQGE---RCAVHGERLHLFC 103
Query: 239 EVDKEAICVVCRESRSHKQHSVLPLEEVVQEYQEIKLETTLVGILQIEQE 288
E D +A+C VC +SR H+ H+++PLEE QEYQE KL+ L G L+ +QE
Sbjct: 104 EKDGKALCWVCAQSRKHRDHAMVPLEEAAQEYQE-KLQVAL-GELRRKQE 151
Score = 50.8 bits (120), Expect = 1e-06
Identities = 19/32 (59%), Positives = 25/32 (78%)
Query: 16 EEAVCAICLDYFKDPVSISCGHNFCRGCVTQL 47
EE C ICLD F +PVSI CGH+FC+ C++Q+
Sbjct: 12 EEVTCPICLDPFVEPVSIECGHSFCQECISQV 43
>gi|198442878 tripartite motif-containing 17 isoform 3 [Homo
sapiens]
Length = 343
Score = 85.5 bits (210), Expect = 5e-17
Identities = 44/98 (44%), Positives = 61/98 (62%), Gaps = 8/98 (8%)
Query: 179 GQFTCPQCRKSFTRRSFRPNLQLANMVQIIRQMCPTPYRGNRSNDQGMCFKHQEALKLFC 238
G F CP+CR+ +R+ PN L + ++ +Q + G + D +C +H E LKLFC
Sbjct: 58 GSFPCPECREMSPQRNLLPNRLLTKVAEMAQQ-----HPGLQKQD--LCQEHHEPLKLFC 110
Query: 239 EVDKEAICVVCRESRSHKQHSVLPLEEVVQEYQEIKLE 276
+ D+ ICVVCRESR H+ H VLP EE VQ Y ++KLE
Sbjct: 111 QKDQSPICVVCRESREHRLHRVLPAEEAVQGY-KLKLE 147
Score = 64.7 bits (156), Expect = 9e-11
Identities = 25/37 (67%), Positives = 28/37 (75%)
Query: 14 LQEEAVCAICLDYFKDPVSISCGHNFCRGCVTQLWSK 50
LQEEA C+ICLDYF DPV +CGHNFCR C+ W K
Sbjct: 10 LQEEATCSICLDYFTDPVMTTCGHNFCRACIQLSWEK 46
>gi|68160935 tripartite motif-containing 17 isoform 2 [Homo sapiens]
Length = 450
Score = 85.5 bits (210), Expect = 5e-17
Identities = 44/98 (44%), Positives = 61/98 (62%), Gaps = 8/98 (8%)
Query: 179 GQFTCPQCRKSFTRRSFRPNLQLANMVQIIRQMCPTPYRGNRSNDQGMCFKHQEALKLFC 238
G F CP+CR+ +R+ PN L + ++ +Q + G + D +C +H E LKLFC
Sbjct: 31 GSFPCPECREMSPQRNLLPNRLLTKVAEMAQQ-----HPGLQKQD--LCQEHHEPLKLFC 83
Query: 239 EVDKEAICVVCRESRSHKQHSVLPLEEVVQEYQEIKLE 276
+ D+ ICVVCRESR H+ H VLP EE VQ Y ++KLE
Sbjct: 84 QKDQSPICVVCRESREHRLHRVLPAEEAVQGY-KLKLE 120
Score = 32.7 bits (73), Expect = 0.39
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 34 SCGHNFCRGCVTQLWSK 50
+CGHNFCR C+ W K
Sbjct: 3 TCGHNFCRACIQLSWEK 19
>gi|68160933 tripartite motif-containing 17 isoform 1 [Homo sapiens]
Length = 477
Score = 85.5 bits (210), Expect = 5e-17
Identities = 44/98 (44%), Positives = 61/98 (62%), Gaps = 8/98 (8%)
Query: 179 GQFTCPQCRKSFTRRSFRPNLQLANMVQIIRQMCPTPYRGNRSNDQGMCFKHQEALKLFC 238
G F CP+CR+ +R+ PN L + ++ +Q + G + D +C +H E LKLFC
Sbjct: 58 GSFPCPECREMSPQRNLLPNRLLTKVAEMAQQ-----HPGLQKQD--LCQEHHEPLKLFC 110
Query: 239 EVDKEAICVVCRESRSHKQHSVLPLEEVVQEYQEIKLE 276
+ D+ ICVVCRESR H+ H VLP EE VQ Y ++KLE
Sbjct: 111 QKDQSPICVVCRESREHRLHRVLPAEEAVQGY-KLKLE 147
Score = 64.7 bits (156), Expect = 9e-11
Identities = 25/37 (67%), Positives = 28/37 (75%)
Query: 14 LQEEAVCAICLDYFKDPVSISCGHNFCRGCVTQLWSK 50
LQEEA C+ICLDYF DPV +CGHNFCR C+ W K
Sbjct: 10 LQEEATCSICLDYFTDPVMTTCGHNFCRACIQLSWEK 46
>gi|7705825 tripartite motif-containing 17 isoform 1 [Homo sapiens]
Length = 477
Score = 85.5 bits (210), Expect = 5e-17
Identities = 44/98 (44%), Positives = 61/98 (62%), Gaps = 8/98 (8%)
Query: 179 GQFTCPQCRKSFTRRSFRPNLQLANMVQIIRQMCPTPYRGNRSNDQGMCFKHQEALKLFC 238
G F CP+CR+ +R+ PN L + ++ +Q + G + D +C +H E LKLFC
Sbjct: 58 GSFPCPECREMSPQRNLLPNRLLTKVAEMAQQ-----HPGLQKQD--LCQEHHEPLKLFC 110
Query: 239 EVDKEAICVVCRESRSHKQHSVLPLEEVVQEYQEIKLE 276
+ D+ ICVVCRESR H+ H VLP EE VQ Y ++KLE
Sbjct: 111 QKDQSPICVVCRESREHRLHRVLPAEEAVQGY-KLKLE 147
Score = 64.7 bits (156), Expect = 9e-11
Identities = 25/37 (67%), Positives = 28/37 (75%)
Query: 14 LQEEAVCAICLDYFKDPVSISCGHNFCRGCVTQLWSK 50
LQEEA C+ICLDYF DPV +CGHNFCR C+ W K
Sbjct: 10 LQEEATCSICLDYFTDPVMTTCGHNFCRACIQLSWEK 46
>gi|14719418 tripartite motif protein TRIM5 isoform alpha [Homo
sapiens]
Length = 493
Score = 83.2 bits (204), Expect = 3e-16
Identities = 43/111 (38%), Positives = 67/111 (60%), Gaps = 5/111 (4%)
Query: 179 GQFTCPQCRKSFTRRSFRPNLQLANMVQIIRQMCPTPYRGNRSNDQGMCFKHQEALKLFC 238
G+ +CP CR S+ + RPN +AN+V+ +R++ +P G + + C +H E L LFC
Sbjct: 51 GESSCPVCRISYQPENIRPNRHVANLVEKLREVKLSP-EGQKVDH---CARHGEKLLLFC 106
Query: 239 EVDKEAICVVCRESRSHKQHSVLPLEEVVQEYQEIKLETTLVGILQIEQES 289
+ D + IC +C S+ H+ H P EEV QEYQ +KL+ L + Q +QE+
Sbjct: 107 QEDGKVICWLCERSQEHRGHHTFPTEEVAQEYQ-VKLQAALEMLRQKQQEA 156
Score = 45.4 bits (106), Expect = 6e-05
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 14 LQEEAVCAICLDYFKDPVSISCGHNFCRGCVT 45
++EE C ICL+ P+S+ CGH+FC+ C+T
Sbjct: 9 VKEEVTCPICLELLTQPLSLDCGHSFCQACLT 40
>gi|44680122 tripartite motif-containing 7 isoform 1 [Homo sapiens]
Length = 511
Score = 80.9 bits (198), Expect = 1e-15
Identities = 46/115 (40%), Positives = 63/115 (54%), Gaps = 13/115 (11%)
Query: 173 PSLPLPGQFTCPQCRKSFTRRSFRPNLQLANMVQIIRQMC-PTPYRGNRSNDQGM----- 226
P PLP CPQCR+ RPN QLA + ++R+ P G +
Sbjct: 72 PPFPLP----CPQCREPARPSQLRPNRQLAAVATLLRRFSLPAAAPGEHGSQAAAARAAA 127
Query: 227 --CFKHQEALKLFCEVDKEAICVVCRESRSHKQHSVLPLEEVVQEYQEIKLETTL 279
C +H E KL+C+ D AICVVC +R H++H+VLPL+E VQE +E+ LE+ L
Sbjct: 128 ARCGQHGEPFKLYCQDDGRAICVVCDRAREHREHAVLPLDEAVQEAKEL-LESRL 181
Score = 58.2 bits (139), Expect = 9e-09
Identities = 20/37 (54%), Positives = 29/37 (78%)
Query: 14 LQEEAVCAICLDYFKDPVSISCGHNFCRGCVTQLWSK 50
LQ EA C+ICL+ F++PVS+ CGH+FCR C+ + W +
Sbjct: 23 LQGEATCSICLELFREPVSVECGHSFCRACIGRCWER 59
>gi|16076875 tripartite motif-containing 7 isoform 4 [Homo sapiens]
Length = 221
Score = 80.9 bits (198), Expect = 1e-15
Identities = 46/115 (40%), Positives = 63/115 (54%), Gaps = 13/115 (11%)
Query: 173 PSLPLPGQFTCPQCRKSFTRRSFRPNLQLANMVQIIRQMC-PTPYRGNRSNDQGM----- 226
P PLP CPQCR+ RPN QLA + ++R+ P G +
Sbjct: 72 PPFPLP----CPQCREPARPSQLRPNRQLAAVATLLRRFSLPAAAPGEHGSQAAAARAAA 127
Query: 227 --CFKHQEALKLFCEVDKEAICVVCRESRSHKQHSVLPLEEVVQEYQEIKLETTL 279
C +H E KL+C+ D AICVVC +R H++H+VLPL+E VQE +E+ LE+ L
Sbjct: 128 ARCGQHGEPFKLYCQDDGRAICVVCDRAREHREHAVLPLDEAVQEAKEL-LESRL 181
Score = 58.2 bits (139), Expect = 9e-09
Identities = 20/37 (54%), Positives = 29/37 (78%)
Query: 14 LQEEAVCAICLDYFKDPVSISCGHNFCRGCVTQLWSK 50
LQ EA C+ICL+ F++PVS+ CGH+FCR C+ + W +
Sbjct: 23 LQGEATCSICLELFREPVSVECGHSFCRACIGRCWER 59
>gi|15011941 tripartite motif protein TRIM4 isoform beta [Homo
sapiens]
Length = 474
Score = 79.3 bits (194), Expect = 4e-15
Identities = 38/104 (36%), Positives = 60/104 (57%), Gaps = 10/104 (9%)
Query: 176 PLPGQFTCPQCRKSFTRRSFRPNLQLANMVQII--RQMCPTPYRGNRSNDQGMCFKHQEA 233
P G F CP+CR + RPN LA + + R++ P P G+C +H E
Sbjct: 42 PGGGPFPCPECRHPSAPAALRPNWALARLTEKTQRRRLGPVP--------PGLCGRHWEP 93
Query: 234 LKLFCEVDKEAICVVCRESRSHKQHSVLPLEEVVQEYQEIKLET 277
L+LFCE D+ +C+VCRES+ H+ H++ P++E + Y+E L++
Sbjct: 94 LRLFCEDDQRPVCLVCRESQEHQTHAMAPIDEAFESYREKLLKS 137
Score = 66.2 bits (160), Expect = 3e-11
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 12 QTLQEEAVCAICLDYFKDPVSISCGHNFCRGCVTQLWS 49
+ +QEE C ICLDYF+DPVSI CGHNFCRGC+ + W+
Sbjct: 4 EDIQEELTCPICLDYFQDPVSIECGHNFCRGCLHRNWA 41
>gi|15011946 tripartite motif protein TRIM5 isoform delta [Homo
sapiens]
Length = 326
Score = 79.0 bits (193), Expect = 5e-15
Identities = 42/111 (37%), Positives = 66/111 (59%), Gaps = 5/111 (4%)
Query: 179 GQFTCPQCRKSFTRRSFRPNLQLANMVQIIRQMCPTPYRGNRSNDQGMCFKHQEALKLFC 238
G+ +CP CR S+ + RPN +AN+V+ +R++ +P G + + C +H E L LFC
Sbjct: 51 GESSCPVCRISYQPENIRPNRHVANIVEKLREVKLSP-EGQKVDH---CARHGEKLLLFC 106
Query: 239 EVDKEAICVVCRESRSHKQHSVLPLEEVVQEYQEIKLETTLVGILQIEQES 289
+ D + IC +C S+ H+ H EEV QEYQ +KL+ L + Q +QE+
Sbjct: 107 QEDGKVICWLCERSQEHRGHHTFLTEEVAQEYQ-VKLQAALEMLRQKQQEA 156
Score = 45.4 bits (106), Expect = 6e-05
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 14 LQEEAVCAICLDYFKDPVSISCGHNFCRGCVT 45
++EE C ICL+ P+S+ CGH+FC+ C+T
Sbjct: 9 VKEEVTCPICLELLTQPLSLDCGHSFCQACLT 40
>gi|15011944 tripartite motif protein TRIM5 isoform gamma [Homo
sapiens]
Length = 347
Score = 79.0 bits (193), Expect = 5e-15
Identities = 42/111 (37%), Positives = 66/111 (59%), Gaps = 5/111 (4%)
Query: 179 GQFTCPQCRKSFTRRSFRPNLQLANMVQIIRQMCPTPYRGNRSNDQGMCFKHQEALKLFC 238
G+ +CP CR S+ + RPN +AN+V+ +R++ +P G + + C +H E L LFC
Sbjct: 51 GESSCPVCRISYQPENIRPNRHVANIVEKLREVKLSP-EGQKVDH---CARHGEKLLLFC 106
Query: 239 EVDKEAICVVCRESRSHKQHSVLPLEEVVQEYQEIKLETTLVGILQIEQES 289
+ D + IC +C S+ H+ H EEV QEYQ +KL+ L + Q +QE+
Sbjct: 107 QEDGKVICWLCERSQEHRGHHTFLTEEVAQEYQ-VKLQAALEMLRQKQQEA 156
Score = 45.4 bits (106), Expect = 6e-05
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 14 LQEEAVCAICLDYFKDPVSISCGHNFCRGCVT 45
++EE C ICL+ P+S+ CGH+FC+ C+T
Sbjct: 9 VKEEVTCPICLELLTQPLSLDCGHSFCQACLT 40
>gi|37622899 ring finger protein 137 [Homo sapiens]
Length = 485
Score = 78.6 bits (192), Expect = 6e-15
Identities = 39/100 (39%), Positives = 60/100 (60%), Gaps = 8/100 (8%)
Query: 177 LPGQ-----FTCPQCRKSFTRRSFRPNLQLANMVQIIRQMCPTPYRGNRSNDQGMCFKHQ 231
+PG+ +TCP CR R+ RPN QLAN+V+ +R + P G + + +C +H
Sbjct: 46 IPGESQNWGYTCPLCRAPVQPRNLRPNWQLANVVEKVRLLRLHPGMGLKGD---LCERHG 102
Query: 232 EALKLFCEVDKEAICVVCRESRSHKQHSVLPLEEVVQEYQ 271
E LK+FC+ D +C C +S H+ HSV+P+E+V EY+
Sbjct: 103 EKLKMFCKEDVLIMCEACSQSPEHEAHSVVPMEDVAWEYK 142
Score = 51.2 bits (121), Expect = 1e-06
Identities = 16/38 (42%), Positives = 27/38 (71%)
Query: 11 MQTLQEEAVCAICLDYFKDPVSISCGHNFCRGCVTQLW 48
++ + EE C IC+ + ++P+SI CGH+FC C++ LW
Sbjct: 7 VEAIVEEVACPICMTFLREPMSIDCGHSFCHSCLSGLW 44
>gi|18079262 tripartite motif-containing 6 isoform 2 [Homo sapiens]
Length = 488
Score = 77.8 bits (190), Expect = 1e-14
Identities = 41/111 (36%), Positives = 66/111 (59%), Gaps = 4/111 (3%)
Query: 179 GQFTCPQCRKSFTRRSFRPNLQLANMVQIIRQMCPTPYRGNRSNDQGMCFKHQEALKLFC 238
G+ +CP C+ S+ + RPN LAN+V+ +R++ P + ++ +C H E L+LFC
Sbjct: 52 GERSCPVCQTSYQPGNLRPNRHLANIVRRLREVVLGPGKQLKAV---LCADHGEKLQLFC 108
Query: 239 EVDKEAICVVCRESRSHKQHSVLPLEEVVQEYQEIKLETTLVGILQIEQES 289
+ D + IC +C S+ H+ H +EEV QEYQE K + +L + EQE+
Sbjct: 109 QEDGKVICWLCERSQEHRGHHTFLVEEVAQEYQE-KFQESLKKLKNEEQEA 158
Score = 48.1 bits (113), Expect = 9e-06
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 14 LQEEAVCAICLDYFKDPVSISCGHNFCRGCVT 45
++EE C ICL+ +P+SI CGH+FC+ C+T
Sbjct: 9 IREEVTCPICLELLTEPLSIDCGHSFCQACIT 40
>gi|51477692 tripartite motif-containing 6 isoform 1 [Homo sapiens]
Length = 516
Score = 77.8 bits (190), Expect = 1e-14
Identities = 41/111 (36%), Positives = 66/111 (59%), Gaps = 4/111 (3%)
Query: 179 GQFTCPQCRKSFTRRSFRPNLQLANMVQIIRQMCPTPYRGNRSNDQGMCFKHQEALKLFC 238
G+ +CP C+ S+ + RPN LAN+V+ +R++ P + ++ +C H E L+LFC
Sbjct: 80 GERSCPVCQTSYQPGNLRPNRHLANIVRRLREVVLGPGKQLKAV---LCADHGEKLQLFC 136
Query: 239 EVDKEAICVVCRESRSHKQHSVLPLEEVVQEYQEIKLETTLVGILQIEQES 289
+ D + IC +C S+ H+ H +EEV QEYQE K + +L + EQE+
Sbjct: 137 QEDGKVICWLCERSQEHRGHHTFLVEEVAQEYQE-KFQESLKKLKNEEQEA 186
Score = 50.1 bits (118), Expect = 2e-06
Identities = 20/42 (47%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 5 ATTPSPMQT-LQEEAVCAICLDYFKDPVSISCGHNFCRGCVT 45
AT SP+ ++EE C ICL+ +P+SI CGH+FC+ C+T
Sbjct: 27 ATMTSPVLVDIREEVTCPICLELLTEPLSIDCGHSFCQACIT 68
>gi|62865604 tripartite motif protein 31 [Homo sapiens]
Length = 425
Score = 77.8 bits (190), Expect = 1e-14
Identities = 41/116 (35%), Positives = 65/116 (56%), Gaps = 3/116 (2%)
Query: 179 GQFTCPQCRKSFTRRSFRPNLQLANMVQIIRQMCPTPYRGNRSNDQGMCFKHQEALKLFC 238
G F CP C+ S + + R N L N+V+ I+ + + + R + C +HQE FC
Sbjct: 49 GFFKCPLCKTSVRKNAIRFNSLLRNLVEKIQALQASEVQSKRK--EATCPRHQEMFHYFC 106
Query: 239 EVDKEAICVVCRESRSHKQHSVLPLEEVVQEYQEIKLETTLVGILQIEQESIHSKA 294
E D + +C VCRES+ HK H+V +EE Q YQ +++ + + Q E+E++ KA
Sbjct: 107 EDDGKFLCFVCRESKDHKSHNVSLIEEAAQNYQG-QIQEQIQVLQQKEKETVQVKA 161
Score = 55.5 bits (132), Expect = 6e-08
Identities = 21/34 (61%), Positives = 26/34 (76%)
Query: 14 LQEEAVCAICLDYFKDPVSISCGHNFCRGCVTQL 47
LQEE +C ICLD + PV+I CGHNFC C+TQ+
Sbjct: 10 LQEEVICPICLDILQKPVTIDCGHNFCLKCITQI 43
>gi|51477690 tripartite motif-containing 6 and tripartite
motif-containing 34 [Homo sapiens]
Length = 842
Score = 77.8 bits (190), Expect = 1e-14
Identities = 41/111 (36%), Positives = 66/111 (59%), Gaps = 4/111 (3%)
Query: 179 GQFTCPQCRKSFTRRSFRPNLQLANMVQIIRQMCPTPYRGNRSNDQGMCFKHQEALKLFC 238
G+ +CP C+ S+ + RPN LAN+V+ +R++ P + ++ +C H E L+LFC
Sbjct: 80 GERSCPVCQTSYQPGNLRPNRHLANIVRRLREVVLGPGKQLKAV---LCADHGEKLQLFC 136
Query: 239 EVDKEAICVVCRESRSHKQHSVLPLEEVVQEYQEIKLETTLVGILQIEQES 289
+ D + IC +C S+ H+ H +EEV QEYQE K + +L + EQE+
Sbjct: 137 QEDGKVICWLCERSQEHRGHHTFLVEEVAQEYQE-KFQESLKKLKNEEQEA 186
Score = 70.1 bits (170), Expect = 2e-12
Identities = 37/111 (33%), Positives = 65/111 (58%), Gaps = 4/111 (3%)
Query: 179 GQFTCPQCRKSFTRRSFRPNLQLANMVQIIRQMCPTPYRGNRSNDQGMCFKHQEALKLFC 238
G+ +CP C S++ + N LAN+V+ ++++ +P G + + +C H E L LFC
Sbjct: 406 GKSSCPVCGISYSFEHLQANQHLANIVERLKEVKLSPDNGKKRD---LCDHHGEKLLLFC 462
Query: 239 EVDKEAICVVCRESRSHKQHSVLPLEEVVQEYQEIKLETTLVGILQIEQES 289
+ D++ IC +C S+ H+ H + EEV +E QE KL+ L + + E+E+
Sbjct: 463 KEDRKVICWLCERSQEHRGHHTVLTEEVFKECQE-KLQAVLKRLKKEEEEA 512
Score = 50.1 bits (118), Expect = 2e-06
Identities = 20/42 (47%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 5 ATTPSPMQT-LQEEAVCAICLDYFKDPVSISCGHNFCRGCVT 45
AT SP+ ++EE C ICL+ +P+SI CGH+FC+ C+T
Sbjct: 27 ATMTSPVLVDIREEVTCPICLELLTEPLSIDCGHSFCQACIT 68
Score = 47.8 bits (112), Expect = 1e-05
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 14 LQEEAVCAICLDYFKDPVSISCGHNFCRGCVT 45
+QEE C ICL+ +P+S+ CGH+ CR C+T
Sbjct: 363 VQEEVTCPICLELLTEPLSLDCGHSLCRACIT 394
>gi|117938316 tripartite motif-containing 22 [Homo sapiens]
Length = 498
Score = 77.0 bits (188), Expect = 2e-14
Identities = 38/111 (34%), Positives = 67/111 (60%), Gaps = 4/111 (3%)
Query: 179 GQFTCPQCRKSFTRRSFRPNLQLANMVQIIRQMCPTPYRGNRSNDQGMCFKHQEALKLFC 238
G+ +CP C+ F + RPN LAN+V+ ++++ +P G + + +C H + L++FC
Sbjct: 52 GESSCPVCQTRFQPGNLRPNRHLANIVERVKEVKMSPQEGQKRD---VCEHHGKKLQIFC 108
Query: 239 EVDKEAICVVCRESRSHKQHSVLPLEEVVQEYQEIKLETTLVGILQIEQES 289
+ D + IC VC S+ H+ H + EVV+E QE KL+ L +++ +QE+
Sbjct: 109 KEDGKVICWVCELSQEHQGHQTFRINEVVKECQE-KLQVALQRLIKEDQEA 158
Score = 46.2 bits (108), Expect = 3e-05
Identities = 14/32 (43%), Positives = 24/32 (75%)
Query: 14 LQEEAVCAICLDYFKDPVSISCGHNFCRGCVT 45
+++E C ICL+ +P+S+ CGH+FC+ C+T
Sbjct: 9 IEKEVTCPICLELLTEPLSLDCGHSFCQACIT 40
>gi|14670266 tripartite motif protein TRIM4 isoform alpha [Homo
sapiens]
Length = 500
Score = 77.0 bits (188), Expect = 2e-14
Identities = 36/98 (36%), Positives = 56/98 (57%), Gaps = 10/98 (10%)
Query: 176 PLPGQFTCPQCRKSFTRRSFRPNLQLANMVQII--RQMCPTPYRGNRSNDQGMCFKHQEA 233
P G F CP+CR + RPN LA + + R++ P P G+C +H E
Sbjct: 42 PGGGPFPCPECRHPSAPAALRPNWALARLTEKTQRRRLGPVP--------PGLCGRHWEP 93
Query: 234 LKLFCEVDKEAICVVCRESRSHKQHSVLPLEEVVQEYQ 271
L+LFCE D+ +C+VCRES+ H+ H++ P++E + Y+
Sbjct: 94 LRLFCEDDQRPVCLVCRESQEHQTHAMAPIDEAFESYR 131
Score = 66.2 bits (160), Expect = 3e-11
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 12 QTLQEEAVCAICLDYFKDPVSISCGHNFCRGCVTQLWS 49
+ +QEE C ICLDYF+DPVSI CGHNFCRGC+ + W+
Sbjct: 4 EDIQEELTCPICLDYFQDPVSIECGHNFCRGCLHRNWA 41
>gi|22749269 ring finger protein 129 [Homo sapiens]
Length = 471
Score = 75.1 bits (183), Expect = 7e-14
Identities = 35/97 (36%), Positives = 52/97 (53%)
Query: 177 LPGQFTCPQCRKSFTRRSFRPNLQLANMVQIIRQMCPTPYRGNRSNDQGMCFKHQEALKL 236
L F CP CR F +SFR N QL N+ +I +Q+ + R + MC KH + L L
Sbjct: 47 LDDTFPCPVCRFCFPYKSFRRNPQLRNLTEIAKQLQIRRSKRKRQKENAMCEKHNQFLTL 106
Query: 237 FCEVDKEAICVVCRESRSHKQHSVLPLEEVVQEYQEI 273
FC D E +C C S H++H + P+++ ++EI
Sbjct: 107 FCVKDLEILCTQCSFSTKHQKHYICPIKKAASYHREI 143
Score = 62.8 bits (151), Expect = 4e-10
Identities = 24/40 (60%), Positives = 31/40 (77%)
Query: 14 LQEEAVCAICLDYFKDPVSISCGHNFCRGCVTQLWSKEDE 53
LQEE+ C ICL+Y KDPV+I+CGHNFCR C++ W D+
Sbjct: 10 LQEESSCPICLEYLKDPVTINCGHNFCRSCLSVSWKDLDD 49
>gi|112421127 tripartite motif-containing 58 [Homo sapiens]
Length = 486
Score = 75.1 bits (183), Expect = 7e-14
Identities = 40/101 (39%), Positives = 53/101 (52%), Gaps = 6/101 (5%)
Query: 179 GQFTCPQCRKSFTRRSFRPNLQLANMVQIIRQMCPTPYRGNRSNDQGMCFKHQEALKLFC 238
G + CPQCR F FRPN QLA +V+ +R++ G R C +H E L FC
Sbjct: 53 GVYACPQCRGPFRPSGFRPNRQLAGLVESVRRLGLGAGPGARR-----CARHGEDLSRFC 107
Query: 239 EVDKEAICVVCRESRSHKQHSVLPLEEVVQEYQEIKLETTL 279
E D+ A+C VC H+ H PL+E YQ +KL+ L
Sbjct: 108 EEDEAALCWVCDAGPEHRTHRTAPLQEAAGSYQ-VKLQMAL 147
Score = 55.1 bits (131), Expect = 7e-08
Identities = 19/43 (44%), Positives = 31/43 (72%)
Query: 10 PMQTLQEEAVCAICLDYFKDPVSISCGHNFCRGCVTQLWSKED 52
P + L+E+A C +CLD+ ++PVS+ CGH+FC C+++ K D
Sbjct: 6 PGERLREDARCPVCLDFLQEPVSVDCGHSFCLRCISEFCEKSD 48
>gi|157426898 tripartite motif-containing 10 isoform 1 [Homo
sapiens]
Length = 481
Score = 73.6 bits (179), Expect = 2e-13
Identities = 40/106 (37%), Positives = 57/106 (53%), Gaps = 10/106 (9%)
Query: 167 PDIHPPPSLPLPGQFTCPQCRKSFTRRSFRPNLQLANMVQIIRQMCPTPYRGNRSNDQGM 226
PD+ P TCP C++ F SFRPN QLAN+V+ I ++ G D +
Sbjct: 49 PDLEESP--------TCPLCKEPFRPGSFRPNWQLANVVENIERLQLVSTLGLGEED--V 98
Query: 227 CFKHQEALKLFCEVDKEAICVVCRESRSHKQHSVLPLEEVVQEYQE 272
C +H E + FCE D+ +CVVCRE+ H H++ LE+ Y+E
Sbjct: 99 CQEHGEKIYFFCEDDEMQLCVVCREAGEHATHTMRFLEDAAAPYRE 144
Score = 46.6 bits (109), Expect = 3e-05
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 13 TLQEEAVCAICLDYFKDPVSISCGHNFCRGCVTQ 46
+L +E C IC ++PV+I CGHNFCR C+T+
Sbjct: 9 SLADEVNCPICQGTLREPVTIDCGHNFCRACLTR 42
>gi|157426896 tripartite motif-containing 10 isoform 2 [Homo
sapiens]
Length = 395
Score = 73.6 bits (179), Expect = 2e-13
Identities = 40/106 (37%), Positives = 57/106 (53%), Gaps = 10/106 (9%)
Query: 167 PDIHPPPSLPLPGQFTCPQCRKSFTRRSFRPNLQLANMVQIIRQMCPTPYRGNRSNDQGM 226
PD+ P TCP C++ F SFRPN QLAN+V+ I ++ G D +
Sbjct: 49 PDLEESP--------TCPLCKEPFRPGSFRPNWQLANVVENIERLQLVSTLGLGEED--V 98
Query: 227 CFKHQEALKLFCEVDKEAICVVCRESRSHKQHSVLPLEEVVQEYQE 272
C +H E + FCE D+ +CVVCRE+ H H++ LE+ Y+E
Sbjct: 99 CQEHGEKIYFFCEDDEMQLCVVCREAGEHATHTMRFLEDAAAPYRE 144
Score = 46.6 bits (109), Expect = 3e-05
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 13 TLQEEAVCAICLDYFKDPVSISCGHNFCRGCVTQ 46
+L +E C IC ++PV+I CGHNFCR C+T+
Sbjct: 9 SLADEVNCPICQGTLREPVTIDCGHNFCRACLTR 42
>gi|4508005 tripartite motif-containing 26 [Homo sapiens]
Length = 539
Score = 71.2 bits (173), Expect = 1e-12
Identities = 33/95 (34%), Positives = 55/95 (57%), Gaps = 5/95 (5%)
Query: 183 CPQCRKSFTRRSFRPNLQLANMVQIIRQMCPTPYRG-----NRSNDQGMCFKHQEALKLF 237
CP C+K F + + RP QLA++V+ I ++ R D +C +H+E L +
Sbjct: 53 CPLCKKPFKKENIRPVWQLASLVENIERLKVDKGRQPGEVTREQQDAKLCERHREKLHYY 112
Query: 238 CEVDKEAICVVCRESRSHKQHSVLPLEEVVQEYQE 272
CE D + +CV+CRESR H+ H+ + +E+ Q ++E
Sbjct: 113 CEDDGKLLCVMCRESREHRPHTAVLMEKAAQPHRE 147
Score = 62.8 bits (151), Expect = 4e-10
Identities = 23/41 (56%), Positives = 32/41 (78%)
Query: 7 TPSPMQTLQEEAVCAICLDYFKDPVSISCGHNFCRGCVTQL 47
T +P+++L+EE C+ICLDY +DPV+I CGH FCR C T +
Sbjct: 3 TSAPLRSLEEEVTCSICLDYLRDPVTIDCGHVFCRSCTTDV 43
Score = 46.2 bits (108), Expect = 3e-05
Identities = 31/85 (36%), Positives = 43/85 (50%), Gaps = 31/85 (36%)
Query: 48 WSKEDEEDQNEEEDEWEEEEDEEAVGAMDGWDGSIREVLYRGNADEELFQDQDDDELWLG 107
WS+++EE +EE+E EEEE+EE G DG+D + D+DE LG
Sbjct: 379 WSEDEEE--GDEEEEGEEEEEEEEAGYGDGYDD----------------WETDEDEESLG 420
Query: 108 DSGITNWDNVDYMWDEEEEEEEEDQ 132
D +EEEEEEEE++
Sbjct: 421 D-------------EEEEEEEEEEE 432
Score = 29.6 bits (65), Expect = 3.3
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 114 WDNVDYMWDEEEE--EEEEDQDYYLGGLRPDLRIDVYREEEILEAYDEDEDEE 164
W + DEEEE EEEE+++ G D D +EE L +E+E+EE
Sbjct: 379 WSEDEEEGDEEEEGEEEEEEEEAGYGDGYDDWETD--EDEESLGDEEEEEEEE 429
Score = 29.6 bits (65), Expect = 3.3
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 51 EDEEDQNEEEDEWEEEEDEEAVGAMDG 77
EDEE +EE+E EEEE+E M G
Sbjct: 414 EDEESLGDEEEEEEEEEEEVLESCMVG 440
Score = 28.5 bits (62), Expect = 7.4
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 48 WSKEDEEDQNEEEDEWEEEEDEEAV 72
W +++E+ +E+E EEEE+EE +
Sbjct: 410 WETDEDEESLGDEEEEEEEEEEEVL 434
>gi|145275183 tripartite motif protein 34 isoform 3 [Homo sapiens]
Length = 270
Score = 70.1 bits (170), Expect = 2e-12
Identities = 37/111 (33%), Positives = 65/111 (58%), Gaps = 4/111 (3%)
Query: 179 GQFTCPQCRKSFTRRSFRPNLQLANMVQIIRQMCPTPYRGNRSNDQGMCFKHQEALKLFC 238
G+ +CP C S++ + N LAN+V+ ++++ +P G + + +C H E L LFC
Sbjct: 52 GKSSCPVCGISYSFEHLQANQHLANIVERLKEVKLSPDNGKKRD---LCDHHGEKLLLFC 108
Query: 239 EVDKEAICVVCRESRSHKQHSVLPLEEVVQEYQEIKLETTLVGILQIEQES 289
+ D++ IC +C S+ H+ H + EEV +E QE KL+ L + + E+E+
Sbjct: 109 KEDRKVICWLCERSQEHRGHHTVLTEEVFKECQE-KLQAVLKRLKKEEEEA 158
Score = 47.8 bits (112), Expect = 1e-05
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 14 LQEEAVCAICLDYFKDPVSISCGHNFCRGCVT 45
+QEE C ICL+ +P+S+ CGH+ CR C+T
Sbjct: 9 VQEEVTCPICLELLTEPLSLDCGHSLCRACIT 40
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.135 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,421,014
Number of Sequences: 37866
Number of extensions: 831310
Number of successful extensions: 17303
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 300
Number of HSP's that attempted gapping in prelim test: 7482
Number of HSP's gapped (non-prelim): 5078
length of query: 297
length of database: 18,247,518
effective HSP length: 102
effective length of query: 195
effective length of database: 14,385,186
effective search space: 2805111270
effective search space used: 2805111270
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.