TRIM6 9705

Name: TRIM6	Sequence: fasta or formatted (488aa)		NCBI GI: 18079262
Description: tripartite motif-containing 6 isoform 2		Referenced in: Tripartite Motif Family
Other entries for this name: alt prot [516aa] tripartite motif-containing 6 isoform 1
Composition: Amino acid Percentage Count Longest homopolymer A alanine 3.9 19 1 C cysteine 4.1 20 1 D aspartate 3.3 16 1 E glutamate 9.2 45 2 F phenylalanine 3.9 19 1 G glycine 4.7 23 1 H histidine 3.3 16 2 I isoleucine 3.5 17 2 K lysine 5.3 26 2 L leucine 10.2 50 3 M methionine 1.4 7 1 N asparagine 4.3 21 1 P proline 5.1 25 2 Q glutamine 5.7 28 1 R arginine 7.4 36 2 S serine 7.4 36 2 T threonine 5.3 26 2 V valine 7.2 35 2 W tryptophan 1.4 7 1 Y tyrosine 3.3 16 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 tripartite motif-containing 6 isoform 2 TRIM6 1.000 tripartite motif-containing 6 isoform 1 TRIM6-TRIM34 0.595 tripartite motif-containing 6 and tripartite motif-c... TRIM34 0.546 tripartite motif protein 34 isoform 1 TRIM34 0.546 tripartite motif protein 34 isoform 1 TRIM22 0.529 tripartite motif-containing 22 TRIM5 0.513 tripartite motif protein TRIM5 isoform alpha TRIM21 0.380 tripartite motif protein 21 TRIM5 0.363 tripartite motif protein TRIM5 isoform delta TRIM5 0.363 tripartite motif protein TRIM5 isoform gamma TRIM68 0.322 ring finger protein 137 TRIM34 0.307 tripartite motif protein 34 isoform 3 TRIM58 0.289 tripartite motif-containing 58 TRIM38 0.274 tripartite motif-containing 38 TRIM11 0.266 tripartite motif-containing 11 TRIM39 0.248 tripartite motif-containing 39 isoform 2 TRIM27 0.246 ret finger protein TRIM39 0.238 tripartite motif-containing 39 isoform 1 TRIM34 0.231 tripartite motif protein 34 isoform 2 TRIM17 0.212 tripartite motif-containing 17 isoform 1 TRIM17 0.212 tripartite motif-containing 17 isoform 1 TRIM60 0.204 ring finger protein 129 TRIML1 0.199 tripartite motif family-like 1 TRIM75 0.196 tripartite motif-containing 75 TRIM4 0.192 tripartite motif protein TRIM4 isoform beta TRIM17 0.191 tripartite motif-containing 17 isoform 2 TRIM7 0.184 tripartite motif-containing 7 isoform 1 TRIM4 0.178 tripartite motif protein TRIM4 isoform alpha MEFV 0.176 Mediterranean fever protein TRIM41 0.175 tripartite motif-containing 41 isoform 1 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.