TRIM52 3930

Name: TRIM52	Sequence: fasta or formatted (297aa)		NCBI GI: 14249412
Description: tripartite motif-containing 52		Referenced in: Tripartite Motif Family
Composition: Amino acid Percentage Count Longest homopolymer A alanine 4.0 12 1 C cysteine 4.0 12 1 D aspartate 9.1 27 3 E glutamate 15.5 46 8 F phenylalanine 2.7 8 1 G glycine 5.1 15 2 H histidine 2.0 6 1 I isoleucine 4.7 14 2 K lysine 3.0 9 1 L leucine 7.7 23 1 M methionine 2.4 7 1 N asparagine 3.4 10 1 P proline 5.1 15 3 Q glutamine 6.7 20 1 R arginine 5.1 15 2 S serine 5.1 15 1 T threonine 3.4 10 2 V valine 5.1 15 2 W tryptophan 2.0 6 1 Y tyrosine 4.0 12 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 tripartite motif-containing 52 TRIM41 0.528 tripartite motif-containing 41 isoform 2 TRIM41 0.528 tripartite motif-containing 41 isoform 1 TRIM27 0.123 ret finger protein TRIM39 0.118 tripartite motif-containing 39 isoform 2 TRIM39 0.118 tripartite motif-containing 39 isoform 1 TRIM21 0.111 tripartite motif protein 21 TRIM17 0.101 tripartite motif-containing 17 isoform 3 TRIM17 0.101 tripartite motif-containing 17 isoform 2 TRIM17 0.101 tripartite motif-containing 17 isoform 1 TRIM17 0.101 tripartite motif-containing 17 isoform 1 TRIM5 0.096 tripartite motif protein TRIM5 isoform alpha TRIM7 0.093 tripartite motif-containing 7 isoform 1 TRIM7 0.093 tripartite motif-containing 7 isoform 4 TRIM4 0.089 tripartite motif protein TRIM4 isoform beta TRIM5 0.089 tripartite motif protein TRIM5 isoform delta TRIM5 0.089 tripartite motif protein TRIM5 isoform gamma TRIM68 0.089 ring finger protein 137 TRIM6 0.088 tripartite motif-containing 6 isoform 2 TRIM6 0.088 tripartite motif-containing 6 isoform 1 TRIM31 0.088 tripartite motif protein 31 TRIM6-TRIM34 0.088 tripartite motif-containing 6 and tripartite motif-c... TRIM22 0.086 tripartite motif-containing 22 TRIM4 0.086 tripartite motif protein TRIM4 isoform alpha TRIM60 0.083 ring finger protein 129 TRIM58 0.083 tripartite motif-containing 58 TRIM10 0.081 tripartite motif-containing 10 isoform 1 TRIM10 0.081 tripartite motif-containing 10 isoform 2 TRIM26 0.076 tripartite motif-containing 26 TRIM34 0.075 tripartite motif protein 34 isoform 3 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.