TRIM39 24150

Name: TRIM39	Sequence: fasta or formatted (518aa)		NCBI GI: 25777696
Description: tripartite motif-containing 39 isoform 1		Referenced in: Tripartite Motif Family
Other entries for this name: alt prot [488aa] tripartite motif-containing 39 isoform 2
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.6 34 3 C cysteine 3.5 18 1 D aspartate 4.6 24 2 E glutamate 10.2 53 4 F phenylalanine 3.7 19 1 G glycine 4.1 21 2 H histidine 2.9 15 2 I isoleucine 4.1 21 2 K lysine 7.1 37 2 L leucine 11.2 58 2 M methionine 0.8 4 1 N asparagine 2.3 12 1 P proline 5.0 26 2 Q glutamine 3.7 19 2 R arginine 8.1 42 2 S serine 5.6 29 2 T threonine 6.6 34 3 V valine 6.0 31 2 W tryptophan 1.5 8 2 Y tyrosine 2.5 13 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 tripartite motif-containing 39 isoform 1 TRIM39 0.926 tripartite motif-containing 39 isoform 2 TRIM75 0.343 tripartite motif-containing 75 TRIM60 0.340 ring finger protein 129 TRIM11 0.323 tripartite motif-containing 11 TRIM27 0.313 ret finger protein TRIM21 0.309 tripartite motif protein 21 TRIM58 0.288 tripartite motif-containing 58 TRIM68 0.280 ring finger protein 137 TRIM38 0.279 tripartite motif-containing 38 TRIM7 0.275 tripartite motif-containing 7 isoform 1 TRIM17 0.274 tripartite motif-containing 17 isoform 1 TRIM17 0.274 tripartite motif-containing 17 isoform 1 TRIM10 0.266 tripartite motif-containing 10 isoform 1 TRIML1 0.254 tripartite motif family-like 1 TRIM17 0.250 tripartite motif-containing 17 isoform 2 TRIM41 0.244 tripartite motif-containing 41 isoform 1 TRIM6 0.229 tripartite motif-containing 6 isoform 1 TRIM6 0.227 tripartite motif-containing 6 isoform 2 MEFV 0.226 Mediterranean fever protein TRIM4 0.225 tripartite motif protein TRIM4 isoform beta TRIM69 0.225 tripartite motif-containing 69 isoform a TRIM62 0.215 tripartite motif-containing 62 TRIM4 0.211 tripartite motif protein TRIM4 isoform alpha TRIM26 0.209 tripartite motif-containing 26 TRIM10 0.203 tripartite motif-containing 10 isoform 2 TRIM15 0.202 tripartite motif protein 15 TRIM6-TRIM34 0.197 tripartite motif-containing 6 and tripartite motif-c... TRIM5 0.197 tripartite motif protein TRIM5 isoform alpha TRIM34 0.196 tripartite motif protein 34 isoform 1 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.