Guide to the Human Genome
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Name: TRIM27 Sequence: fasta or formatted (513aa) NCBI GI: 5730009
Description:

ret finger protein

Referenced in:

Tripartite Motif Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7         29           2
 C cysteine            4.5         23           2
 D aspartate           4.1         21           1
 E glutamate           8.8         45           2
 F phenylalanine       3.7         19           1
 G glycine             5.8         30           2
 H histidine           3.3         17           1
 I isoleucine          4.5         23           2
 K lysine              4.1         21           2
 L leucine            10.1         52           2
 M methionine          2.3         12           2
 N asparagine          2.7         14           1
 P proline             5.8         30           2
 Q glutamine           6.2         32           3
 R arginine            6.4         33           3
 S serine              6.8         35           2
 T threonine           5.1         26           2
 V valine              5.3         27           2
 W tryptophan          1.6          8           1
 Y tyrosine            3.1         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ret finger protein 
TRIM39                0.322   tripartite motif-containing 39 isoform 2 
TRIM11                0.322   tripartite motif-containing 11 
MEFV                  0.311   Mediterranean fever protein 
TRIM39                0.309   tripartite motif-containing 39 isoform 1 
TRIM21                0.294   tripartite motif protein 21 
TRIM7                 0.292   tripartite motif-containing 7 isoform 1 
TRIM68                0.289   ring finger protein 137 
TRIM17                0.278   tripartite motif-containing 17 isoform 1 
TRIM17                0.278   tripartite motif-containing 17 isoform 1 
TRIM58                0.261   tripartite motif-containing 58 
TRIM17                0.251   tripartite motif-containing 17 isoform 2 
TRIM38                0.251   tripartite motif-containing 38 
TRIM75                0.243   tripartite motif-containing 75 
TRIM10                0.240   tripartite motif-containing 10 isoform 1 
TRIM60                0.233   ring finger protein 129 
TRIM6                 0.233   tripartite motif-containing 6 isoform 2 
TRIM6                 0.233   tripartite motif-containing 6 isoform 1 
TRIM41                0.224   tripartite motif-containing 41 isoform 1 
TRIML1                0.220   tripartite motif family-like 1 
TRIM4                 0.216   tripartite motif protein TRIM4 isoform beta 
TRIM15                0.214   tripartite motif protein 15 
TRIM5                 0.210   tripartite motif protein TRIM5 isoform alpha 
TRIM4                 0.207   tripartite motif protein TRIM4 isoform alpha 
TRIM26                0.207   tripartite motif-containing 26 
TRIM22                0.202   tripartite motif-containing 22 
TRIM34                0.201   tripartite motif protein 34 isoform 1 
TRIM34                0.201   tripartite motif protein 34 isoform 1 
TRIM6-TRIM34          0.201   tripartite motif-containing 6 and tripartite motif-c...
TRIM10                0.195   tripartite motif-containing 10 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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