Guide to the Human Genome
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Name: TRIM17 Sequence: fasta or formatted (477aa) NCBI GI: 68160933
Description:

tripartite motif-containing 17 isoform 1

Referenced in:

Tripartite Motif Family

Other entries for this name:
alt prot [343aa] tripartite motif-containing 17 isoform 3
alt prot [450aa] tripartite motif-containing 17 isoform 2
alt mRNA [477aa] tripartite motif-containing 17 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         26           1
 C cysteine            4.0         19           1
 D aspartate           3.1         15           1
 E glutamate          10.1         48           4
 F phenylalanine       3.6         17           2
 G glycine             6.1         29           1
 H histidine           2.3         11           2
 I isoleucine          1.9          9           1
 K lysine              5.0         24           2
 L leucine            10.9         52           4
 M methionine          2.9         14           1
 N asparagine          2.1         10           2
 P proline             6.1         29           2
 Q glutamine           6.3         30           2
 R arginine            7.8         37           2
 S serine              6.9         33           2
 T threonine           4.6         22           2
 V valine              6.9         33           2
 W tryptophan          1.3          6           1
 Y tyrosine            2.7         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tripartite motif-containing 17 isoform 1 
TRIM17                1.000   tripartite motif-containing 17 isoform 1 
TRIM17                0.944   tripartite motif-containing 17 isoform 2 
TRIM17                0.604   tripartite motif-containing 17 isoform 3 
TRIM11                0.373   tripartite motif-containing 11 
TRIM39                0.305   tripartite motif-containing 39 isoform 2 
TRIM27                0.304   ret finger protein 
TRIM58                0.298   tripartite motif-containing 58 
TRIM39                0.297   tripartite motif-containing 39 isoform 1 
TRIM21                0.284   tripartite motif protein 21 
TRIM4                 0.279   tripartite motif protein TRIM4 isoform beta 
TRIM68                0.274   ring finger protein 137 
TRIM4                 0.265   tripartite motif protein TRIM4 isoform alpha 
TRIM38                0.248   tripartite motif-containing 38 
TRIM75                0.232   tripartite motif-containing 75 
TRIM7                 0.232   tripartite motif-containing 7 isoform 1 
TRIM60                0.231   ring finger protein 129 
TRIM6                 0.219   tripartite motif-containing 6 isoform 2 
TRIM6                 0.219   tripartite motif-containing 6 isoform 1 
TRIML1                0.219   tripartite motif family-like 1 
TRIM5                 0.205   tripartite motif protein TRIM5 isoform alpha 
TRIM64                0.203   tripartite motif-containing 64 
LOC642446             0.203   PREDICTED: tripartite motif-containing protein 64B-...
TRIM43                0.201   tripartite motif-containing 43 
LOC646754             0.198   PREDICTED: tripartite motif-containing protein 64C-...
LOC646754             0.198   PREDICTED: tripartite motif-containing protein 64C-...
LOC646754             0.198   PREDICTED: tripartite motif-containing protein 64C-...
TRIM41                0.198   tripartite motif-containing 41 isoform 1 
LOC653192             0.195   PREDICTED: Tripartite motif-containing protein 43-li...
LOC646754             0.194   PREDICTED: tripartite motif-containing protein 64C-...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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