TRIM5 4299

Name: TRIM5	Sequence: fasta or formatted (493aa)		NCBI GI: 14719418
Description: tripartite motif protein TRIM5 isoform alpha		Referenced in: Additional Interaction Domain Families Tripartite Motif Family
Other entries for this name: alt prot [347aa] tripartite motif protein TRIM5 isoform gamma alt prot [326aa] tripartite motif protein TRIM5 isoform delta
Composition: Amino acid Percentage Count Longest homopolymer A alanine 4.3 21 2 C cysteine 4.3 21 1 D aspartate 4.3 21 1 E glutamate 9.3 46 3 F phenylalanine 4.1 20 2 G glycine 4.9 24 1 H histidine 2.6 13 2 I isoleucine 5.1 25 2 K lysine 6.3 31 2 L leucine 8.9 44 3 M methionine 1.6 8 1 N asparagine 4.3 21 2 P proline 4.9 24 1 Q glutamine 6.1 30 2 R arginine 4.9 24 2 S serine 7.3 36 2 T threonine 4.9 24 1 V valine 7.9 39 1 W tryptophan 1.4 7 1 Y tyrosine 2.8 14 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 tripartite motif protein TRIM5 isoform alpha TRIM5 0.580 tripartite motif protein TRIM5 isoform delta TRIM5 0.580 tripartite motif protein TRIM5 isoform gamma TRIM34 0.516 tripartite motif protein 34 isoform 1 TRIM34 0.516 tripartite motif protein 34 isoform 1 TRIM6-TRIM34 0.516 tripartite motif-containing 6 and tripartite motif-c... TRIM6 0.511 tripartite motif-containing 6 isoform 2 TRIM6 0.511 tripartite motif-containing 6 isoform 1 TRIM22 0.501 tripartite motif-containing 22 TRIM21 0.326 tripartite motif protein 21 TRIM34 0.300 tripartite motif protein 34 isoform 3 TRIM68 0.269 ring finger protein 137 TRIM58 0.258 tripartite motif-containing 58 TRIM11 0.239 tripartite motif-containing 11 TRIM38 0.233 tripartite motif-containing 38 TRIM27 0.221 ret finger protein TRIM39 0.215 tripartite motif-containing 39 isoform 2 TRIM34 0.211 tripartite motif protein 34 isoform 2 TRIM39 0.205 tripartite motif-containing 39 isoform 1 TRIM60 0.202 ring finger protein 129 TRIM17 0.198 tripartite motif-containing 17 isoform 1 TRIM17 0.198 tripartite motif-containing 17 isoform 1 TRIM17 0.178 tripartite motif-containing 17 isoform 2 TRIM4 0.173 tripartite motif protein TRIM4 isoform beta TRIML1 0.163 tripartite motif family-like 1 TRIM4 0.160 tripartite motif protein TRIM4 isoform alpha SPRYD5 0.160 SPRY domain containing 5 LOC642446 0.160 PREDICTED: tripartite motif-containing protein 64B-... TRIM64 0.159 tripartite motif-containing 64 LOC120824 0.158 PREDICTED: similar to hCG1802386 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.