TRIM5 4995

Name: TRIM5	Sequence: fasta or formatted (326aa)		NCBI GI: 15011946
Description: tripartite motif protein TRIM5 isoform delta		Referenced in: Additional Interaction Domain Families Tripartite Motif Family
Other entries for this name: alt prot [493aa] tripartite motif protein TRIM5 isoform alpha alt prot [347aa] tripartite motif protein TRIM5 isoform gamma
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.2 17 2 C cysteine 3.4 11 1 D aspartate 4.3 14 1 E glutamate 12.0 39 3 F phenylalanine 2.5 8 1 G glycine 3.7 12 1 H histidine 2.8 9 2 I isoleucine 4.3 14 1 K lysine 6.7 22 2 L leucine 11.7 38 3 M methionine 2.1 7 1 N asparagine 3.4 11 1 P proline 3.7 12 2 Q glutamine 7.7 25 2 R arginine 6.4 21 2 S serine 6.1 20 2 T threonine 5.2 17 1 V valine 6.1 20 1 W tryptophan 1.5 5 1 Y tyrosine 1.2 4 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 tripartite motif protein TRIM5 isoform delta TRIM5 0.916 tripartite motif protein TRIM5 isoform gamma TRIM5 0.907 tripartite motif protein TRIM5 isoform alpha TRIM6 0.565 tripartite motif-containing 6 isoform 2 TRIM6 0.565 tripartite motif-containing 6 isoform 1 TRIM6-TRIM34 0.565 tripartite motif-containing 6 and tripartite motif-c... TRIM34 0.538 tripartite motif protein 34 isoform 1 TRIM34 0.538 tripartite motif protein 34 isoform 1 TRIM22 0.519 tripartite motif-containing 22 TRIM34 0.473 tripartite motif protein 34 isoform 3 TRIM21 0.347 tripartite motif protein 21 TRIM58 0.300 tripartite motif-containing 58 TRIM68 0.281 ring finger protein 137 TRIM38 0.259 tripartite motif-containing 38 TRIM11 0.256 tripartite motif-containing 11 TRIM17 0.226 tripartite motif-containing 17 isoform 3 TRIM17 0.226 tripartite motif-containing 17 isoform 1 TRIM17 0.226 tripartite motif-containing 17 isoform 1 TRIM27 0.216 ret finger protein TRIM31 0.213 tripartite motif protein 31 TRIM4 0.211 tripartite motif protein TRIM4 isoform beta TRIM39 0.208 tripartite motif-containing 39 isoform 2 TRIM10 0.203 tripartite motif-containing 10 isoform 1 TRIM10 0.203 tripartite motif-containing 10 isoform 2 TRIM39 0.203 tripartite motif-containing 39 isoform 1 TRIM17 0.194 tripartite motif-containing 17 isoform 2 TRIM7 0.192 tripartite motif-containing 7 isoform 1 TRIM4 0.192 tripartite motif protein TRIM4 isoform alpha TRIM26 0.192 tripartite motif-containing 26 TRIM60 0.183 ring finger protein 129 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.