Guide to the Human Genome
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Name: OLFM2 Sequence: fasta or formatted (454aa) NCBI GI: 17157993
Description:

olfactomedin 2

Referenced in:

Additional Brain Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         30           2
 C cysteine            1.5          7           1
 D aspartate           4.4         20           1
 E glutamate           4.8         22           2
 F phenylalanine       3.5         16           1
 G glycine             7.5         34           2
 H histidine           2.2         10           1
 I isoleucine          2.4         11           1
 K lysine              2.9         13           1
 L leucine            10.4         47           5
 M methionine          3.7         17           1
 N asparagine          4.4         20           2
 P proline             4.2         19           3
 Q glutamine           5.1         23           2
 R arginine            6.8         31           2
 S serine              8.4         38           2
 T threonine           6.2         28           2
 V valine              7.3         33           3
 W tryptophan          2.0          9           1
 Y tyrosine            5.7         26           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   olfactomedin 2 
OLFM3                 0.622   olfactomedin 3 
OLFM1                 0.603   olfactomedin related ER localized protein isoform 1 ...
MYOC                  0.217   myocilin 
LPHN3                 0.202   latrophilin 3 precursor 
LPHN1                 0.185   latrophilin 1 isoform 1 precursor 
OLFML2A               0.183   olfactomedin-like 2A 
LPHN1                 0.182   latrophilin 1 isoform 2 precursor 
LPHN2                 0.179   latrophilin 2 precursor 
OLFML2B               0.179   olfactomedin-like 2B 
OLFM4                 0.148   olfactomedin 4 precursor 
GLDN                  0.122   gliomedin 
OLFML3                0.118   olfactomedin-like 3 
OLFML1                0.113   olfactomedin-like 1 
OLFM1                 0.102   olfactomedin related ER localized protein isoform 2 [...
DISC1                 0.012   disrupted in schizophrenia 1 isoform S 
DISC1                 0.012   disrupted in schizophrenia 1 isoform Lv 
DISC1                 0.012   disrupted in schizophrenia 1 isoform L 
ANK1                  0.010   ankyrin 1 isoform 9 
ANK1                  0.010   ankyrin 1 isoform 1 
ANK1                  0.010   ankyrin 1 isoform 3 
ANK1                  0.010   ankyrin 1 isoform 2 
ANK1                  0.010   ankyrin 1 isoform 4 
PROM2                 0.010   prominin 2 
CENPE                 0.009   centromere protein E 
CGN                   0.008   cingulin 
ANKRD35               0.008   ankyrin repeat domain 35 
SYNC                  0.007   syncoilin, intermediate filament 1 isoform 2 
SYNC                  0.007   syncoilin, intermediate filament 1 isoform 1 
C16orf38              0.007   hypothetical protein LOC390667 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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