Guide to the Human Genome
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Name: SLC39A6 Sequence: fasta or formatted (755aa) NCBI GI: 153252201
Description:

solute carrier family 39 (zinc transporter), member 6 isoform 1

Referenced in:

Solute Carrier Families

Other entries for this name:
alt prot [433aa] solute carrier family 39 (zinc transporter), member 6 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         51           3
 C cysteine            1.1          8           1
 D aspartate           5.2         39           3
 E glutamate           6.4         48           4
 F phenylalanine       4.8         36           2
 G glycine             6.0         45           2
 H histidine           9.1         69           5
 I isoleucine          5.2         39           2
 K lysine              5.6         42           4
 L leucine             9.7         73           2
 M methionine          2.5         19           1
 N asparagine          4.4         33           2
 P proline             3.8         29           2
 Q glutamine           3.2         24           2
 R arginine            3.6         27           2
 S serine              9.8         74           3
 T threonine           4.4         33           2
 V valine              5.3         40           1
 W tryptophan          0.8          6           1
 Y tyrosine            2.6         20           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 39 (zinc transporter), member... 
SLC39A6               0.560   solute carrier family 39 (zinc transporter), member...
SLC39A10              0.300   solute carrier family 39 (zinc transporter), member...
SLC39A10              0.300   solute carrier family 39 (zinc transporter), member ...
SLC39A14              0.128   solute carrier family 39 (zinc transporter), member...
SLC39A14              0.128   solute carrier family 39 (zinc transporter), member...
SLC39A14              0.128   solute carrier family 39 (zinc transporter), member...
SLC39A14              0.116   solute carrier family 39 (zinc transporter), member...
SLC39A12              0.086   solute carrier family 39 (zinc transporter), member...
SLC39A12              0.086   solute carrier family 39 (zinc transporter), member...
SLC39A5               0.086   solute carrier family 39 (metal ion transporter), m...
SLC39A5               0.086   solute carrier family 39 (metal ion transporter), m...
SLC39A8               0.085   solute carrier family 39 (zinc transporter), member ...
SLC39A8               0.085   solute carrier family 39 (zinc transporter), member...
SLC39A8               0.085   solute carrier family 39 (zinc transporter), member...
SLC39A4               0.084   solute carrier family 39 (zinc transporter), member...
SLC39A4               0.084   solute carrier family 39 (zinc transporter), member...
SLC39A8               0.075   solute carrier family 39 (zinc transporter), member...
SLC39A7               0.046   solute carrier family 39, member 7 
SLC39A7               0.046   solute carrier family 39, member 7 
SLC39A13              0.037   solute carrier family 39 (zinc transporter), member ...
SLC39A13              0.036   solute carrier family 39 (zinc transporter), member...
CHD1                  0.020   chromodomain helicase DNA binding protein 1 
SLC39A9               0.020   solute carrier family 39 (zinc transporter), member ...
CATSPER1              0.019   sperm-associated cation channel 1 
C10orf140             0.017   hypothetical protein LOC387640 
SLC39A11              0.016   solute carrier family 39, member 11 isoform 1 [Homo...
SLC39A11              0.016   solute carrier family 39, member 11 isoform 2 [Homo...
NUFIP2                0.015   nuclear fragile X mental retardation protein interac...
HRG                   0.015   histidine-rich glycoprotein precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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