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Search of human proteins with 89886217
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|89886217 cerebellin 3 precursor [Homo sapiens]
(205 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|89886217 cerebellin 3 precursor [Homo sapiens] 421 e-118
gi|4757922 cerebellin 1 precursor [Homo sapiens] 215 2e-56
gi|32698861 cerebellin 2 precursor [Homo sapiens] 202 2e-52
gi|18104944 cerebellin 4 precursor [Homo sapiens] 194 4e-50
gi|50428933 C1q domain containing 1 isoform 1 [Homo sapiens] 91 9e-19
gi|50428931 C1q domain containing 1 isoform 3 [Homo sapiens] 91 9e-19
gi|23503235 C1q domain containing 1 isoform 2 [Homo sapiens] 91 9e-19
gi|56606142 complement component 1, q subcomponent-like 4 [Homo ... 90 2e-18
gi|5729785 complement component 1, q subcomponent-like 1 [Homo s... 79 2e-15
gi|58801559 complement component 1, q subcomponent-like 3 [Homo ... 77 1e-14
gi|154937344 complement component 1, q subcomponent-like 2 [Homo... 73 2e-13
gi|13569919 C1q and tumor necrosis factor related protein 3 isof... 68 5e-12
gi|62739183 C1q and tumor necrosis factor related protein 3 isof... 68 5e-12
gi|14149712 C1q and tumor necrosis factor related protein 5 prec... 67 1e-11
gi|148233912 C1q and tumor necrosis factor related protein 4 [Ho... 62 3e-10
gi|56786155 complement component 1, q subcomponent, C chain prec... 58 5e-09
gi|166235903 complement component 1, q subcomponent, C chain pre... 58 5e-09
gi|32895368 alpha 1 type VIII collagen precursor [Homo sapiens] 57 8e-09
gi|17738302 alpha 1 type VIII collagen precursor [Homo sapiens] 57 8e-09
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 57 1e-08
gi|116686136 C1q and tumor necrosis factor related protein 8 [Ho... 55 3e-08
gi|56847616 C1q and tumor necrosis factor related protein 9B [Ho... 55 4e-08
gi|65301115 C1q and tumor necrosis factor related protein 9 [Hom... 55 4e-08
gi|32967300 C1q and tumor necrosis factor related protein 6 [Hom... 55 4e-08
gi|32967294 C1q and tumor necrosis factor related protein 6 [Hom... 55 4e-08
gi|87298828 complement component 1, q subcomponent, B chain prec... 55 5e-08
gi|18105032 type X collagen alpha 1 precursor [Homo sapiens] 53 2e-07
gi|94818738 C1q and tumor necrosis factor related protein 2 [Hom... 53 2e-07
gi|7705753 complement component 1, q subcomponent, A chain precu... 50 1e-06
gi|4757760 adiponectin precursor [Homo sapiens] 48 7e-06
>gi|89886217 cerebellin 3 precursor [Homo sapiens]
Length = 205
Score = 421 bits (1082), Expect = e-118
Identities = 205/205 (100%), Positives = 205/205 (100%)
Query: 1 MLGAKPHWLPGPLHSPGLPLVLVLLALGAGWAQEGSEPVLLEGECLVVCEPGRAAAGGPG 60
MLGAKPHWLPGPLHSPGLPLVLVLLALGAGWAQEGSEPVLLEGECLVVCEPGRAAAGGPG
Sbjct: 1 MLGAKPHWLPGPLHSPGLPLVLVLLALGAGWAQEGSEPVLLEGECLVVCEPGRAAAGGPG 60
Query: 61 GAALGEAPPGRVAFAAVRSHHHEPAGETGNGTSGAIYFDQVLVNEGGGFDRASGSFVAPV 120
GAALGEAPPGRVAFAAVRSHHHEPAGETGNGTSGAIYFDQVLVNEGGGFDRASGSFVAPV
Sbjct: 61 GAALGEAPPGRVAFAAVRSHHHEPAGETGNGTSGAIYFDQVLVNEGGGFDRASGSFVAPV 120
Query: 121 RGVYSFRFHVVKVYNRQTVQVSLMLNTWPVISAFANDPDVTREAATSSVLLPLDPGDRVS 180
RGVYSFRFHVVKVYNRQTVQVSLMLNTWPVISAFANDPDVTREAATSSVLLPLDPGDRVS
Sbjct: 121 RGVYSFRFHVVKVYNRQTVQVSLMLNTWPVISAFANDPDVTREAATSSVLLPLDPGDRVS 180
Query: 181 LRLRRGNLLGGWKYSSFSGFLIFPL 205
LRLRRGNLLGGWKYSSFSGFLIFPL
Sbjct: 181 LRLRRGNLLGGWKYSSFSGFLIFPL 205
>gi|4757922 cerebellin 1 precursor [Homo sapiens]
Length = 193
Score = 215 bits (548), Expect = 2e-56
Identities = 114/194 (58%), Positives = 140/194 (72%), Gaps = 13/194 (6%)
Query: 21 VLVLLALGAGW------AQEGSEPVLLEGECLVVCEPGRAAAGGPGGAALG---EAPPGR 71
VL LL LGA W Q +EP++LEG+CLVVC+ + P G ALG + +
Sbjct: 4 VLELLLLGAAWLAGPARGQNETEPIVLEGKCLVVCDSNPTS--DPTGTALGISVRSGSAK 61
Query: 72 VAFAAVRSHHHEPAGETGNGTSGAIYFDQVLVNEGGGFDRASGSFVAPVRGVYSFRFHVV 131
VAF+A+RS +HEP+ E N T IYFDQVLVN G FD +F+AP +G+YSF FHVV
Sbjct: 62 VAFSAIRSTNHEPS-EMSNRTM-IIYFDQVLVNIGNNFDSERSTFIAPRKGIYSFNFHVV 119
Query: 132 KVYNRQTVQVSLMLNTWPVISAFANDPDVTREAATSSVLLPLDPGDRVSLRLRRGNLLGG 191
KVYNRQT+QVSLMLN WPVISAFA D DVTREAA++ VL+ ++ GDR L+L RGNL+GG
Sbjct: 120 KVYNRQTIQVSLMLNGWPVISAFAGDQDVTREAASNGVLIQMEKGDRAYLKLERGNLMGG 179
Query: 192 WKYSSFSGFLIFPL 205
WKYS+FSGFL+FPL
Sbjct: 180 WKYSTFSGFLVFPL 193
>gi|32698861 cerebellin 2 precursor [Homo sapiens]
Length = 224
Score = 202 bits (514), Expect = 2e-52
Identities = 114/195 (58%), Positives = 142/195 (72%), Gaps = 9/195 (4%)
Query: 17 GLPLVLVLLALGAGW---AQEGSEPVLLEGECLVVCEPGRAAAGGPGGAALG---EAPPG 70
G+ L L+LL L A AQ +EP++LEG+CLVVC+ +A G ++LG +
Sbjct: 33 GVALALLLLLLPACCPVRAQNDTEPIVLEGKCLVVCDSSPSADGAVT-SSLGISVRSGSA 91
Query: 71 RVAFAAVRSHHHEPAGETGNGTSGAIYFDQVLVNEGGGFDRASGSFVAPVRGVYSFRFHV 130
+VAF+A RS +HEP+ E N T IYFDQVLVN G FD AS FVAP +G+YSF FHV
Sbjct: 92 KVAFSATRSTNHEPS-EMSNRTM-TIYFDQVLVNIGNHFDLASSIFVAPRKGIYSFSFHV 149
Query: 131 VKVYNRQTVQVSLMLNTWPVISAFANDPDVTREAATSSVLLPLDPGDRVSLRLRRGNLLG 190
VKVYNRQT+QVSLM N +PVISAFA D DVTREAA++ VLL ++ D+V L+L RGNL+G
Sbjct: 150 VKVYNRQTIQVSLMQNGYPVISAFAGDQDVTREAASNGVLLLMEREDKVHLKLERGNLMG 209
Query: 191 GWKYSSFSGFLIFPL 205
GWKYS+FSGFL+FPL
Sbjct: 210 GWKYSTFSGFLVFPL 224
>gi|18104944 cerebellin 4 precursor [Homo sapiens]
Length = 201
Score = 194 bits (493), Expect = 4e-50
Identities = 111/194 (57%), Positives = 137/194 (70%), Gaps = 8/194 (4%)
Query: 16 PGLPLVLVLLALGAGWAQEGSEPVLLEGECLVVCEPGRAA-AGGPGGAALG---EAPPGR 71
P + LVL L L WAQ +EP++LEG+CLVVC+ A + G + LG A +
Sbjct: 12 PAVLLVLTLPGLPV-WAQNDTEPIVLEGKCLVVCDSNPATDSKGSSSSPLGISVRAANSK 70
Query: 72 VAFAAVRSHHHEPAGETGNGTSGAIYFDQVLVNEGGGFDRASGSFVAPVRGVYSFRFHVV 131
VAF+AVRS +HEP+ E N T IYFDQ+LVN G F S FVAP +G+YSF FHV+
Sbjct: 71 VAFSAVRSTNHEPS-EMSNKTR-IIYFDQILVNVGNFFTLES-VFVAPRKGIYSFSFHVI 127
Query: 132 KVYNRQTVQVSLMLNTWPVISAFANDPDVTREAATSSVLLPLDPGDRVSLRLRRGNLLGG 191
KVY QT+QV+LMLN PVISAFA D DVTREAAT+ VLL LD D+V L+L +GNL+GG
Sbjct: 128 KVYQSQTIQVNLMLNGKPVISAFAGDKDVTREAATNGVLLYLDKEDKVYLKLEKGNLVGG 187
Query: 192 WKYSSFSGFLIFPL 205
W+YS+FSGFL+FPL
Sbjct: 188 WQYSTFSGFLVFPL 201
>gi|50428933 C1q domain containing 1 isoform 1 [Homo sapiens]
Length = 1127
Score = 90.5 bits (223), Expect = 9e-19
Identities = 56/135 (41%), Positives = 78/135 (57%), Gaps = 8/135 (5%)
Query: 71 RVAFAAVRSHHHEPAGETGNGT-SGAIYFDQVLVNEGGGFDRASGSFVAPVRGVYSFRFH 129
RVAF+A R+ + P GT I FD +L N G FD G F PV G Y F FH
Sbjct: 997 RVAFSAARTSNLAP------GTLDQPIVFDLLLNNLGETFDLQLGRFNCPVNGTYVFIFH 1050
Query: 130 VVKVYNRQTVQVSLMLNTWPVISAFANDPDVTREAATSSVLLPLDPGDRVSLRLRRGNLL 189
++K+ + V+LM N ++SA+AND E A++ +L L GD++ LRL RG +
Sbjct: 1051 MLKLAVNVPLYVNLMKNEEVLVSAYANDGAPDHETASNHAILQLFQGDQIWLRLHRGAIY 1110
Query: 190 G-GWKYSSFSGFLIF 203
G WKYS+FSG+L++
Sbjct: 1111 GSSWKYSTFSGYLLY 1125
>gi|50428931 C1q domain containing 1 isoform 3 [Homo sapiens]
Length = 793
Score = 90.5 bits (223), Expect = 9e-19
Identities = 56/135 (41%), Positives = 78/135 (57%), Gaps = 8/135 (5%)
Query: 71 RVAFAAVRSHHHEPAGETGNGT-SGAIYFDQVLVNEGGGFDRASGSFVAPVRGVYSFRFH 129
RVAF+A R+ + P GT I FD +L N G FD G F PV G Y F FH
Sbjct: 663 RVAFSAARTSNLAP------GTLDQPIVFDLLLNNLGETFDLQLGRFNCPVNGTYVFIFH 716
Query: 130 VVKVYNRQTVQVSLMLNTWPVISAFANDPDVTREAATSSVLLPLDPGDRVSLRLRRGNLL 189
++K+ + V+LM N ++SA+AND E A++ +L L GD++ LRL RG +
Sbjct: 717 MLKLAVNVPLYVNLMKNEEVLVSAYANDGAPDHETASNHAILQLFQGDQIWLRLHRGAIY 776
Query: 190 G-GWKYSSFSGFLIF 203
G WKYS+FSG+L++
Sbjct: 777 GSSWKYSTFSGYLLY 791
>gi|23503235 C1q domain containing 1 isoform 2 [Homo sapiens]
Length = 1077
Score = 90.5 bits (223), Expect = 9e-19
Identities = 56/135 (41%), Positives = 78/135 (57%), Gaps = 8/135 (5%)
Query: 71 RVAFAAVRSHHHEPAGETGNGT-SGAIYFDQVLVNEGGGFDRASGSFVAPVRGVYSFRFH 129
RVAF+A R+ + P GT I FD +L N G FD G F PV G Y F FH
Sbjct: 947 RVAFSAARTSNLAP------GTLDQPIVFDLLLNNLGETFDLQLGRFNCPVNGTYVFIFH 1000
Query: 130 VVKVYNRQTVQVSLMLNTWPVISAFANDPDVTREAATSSVLLPLDPGDRVSLRLRRGNLL 189
++K+ + V+LM N ++SA+AND E A++ +L L GD++ LRL RG +
Sbjct: 1001 MLKLAVNVPLYVNLMKNEEVLVSAYANDGAPDHETASNHAILQLFQGDQIWLRLHRGAIY 1060
Query: 190 G-GWKYSSFSGFLIF 203
G WKYS+FSG+L++
Sbjct: 1061 GSSWKYSTFSGYLLY 1075
>gi|56606142 complement component 1, q subcomponent-like 4 [Homo
sapiens]
Length = 238
Score = 89.7 bits (221), Expect = 2e-18
Identities = 61/163 (37%), Positives = 83/163 (50%), Gaps = 16/163 (9%)
Query: 50 EPGRAAAGGPGGAALGEAPPG-----RVAFAAVRSHHHEPAGETGNGTSGAIYFDQVLVN 104
EPGR GP G G P R+AF A HE + FD V+ N
Sbjct: 83 EPGRPGPPGPPGPGPGGVAPAAGYVPRIAFYAGLRRPHEGYE--------VLRFDDVVTN 134
Query: 105 EGGGFDRASGSFVAPVRGVYSFRFHV-VKVYNRQTVQVSLMLNTWPVISAFANDPDVTRE 163
G ++ ASG F P+ GVY F +HV ++ + ++ LM N SA A D D +
Sbjct: 135 VGNAYEAASGKFTCPMPGVYFFAYHVLMRGGDGTSMWADLMKNGQVRASAIAQDADQNYD 194
Query: 164 AATSSVLLPLDPGDRVSLRLRRGNLLGG--WKYSSFSGFLIFP 204
A++SV+L LD GD V ++L G + GG KYS+FSGF+I+P
Sbjct: 195 YASNSVILHLDVGDEVFIKLDGGKVHGGNTNKYSTFSGFIIYP 237
>gi|5729785 complement component 1, q subcomponent-like 1 [Homo
sapiens]
Length = 258
Score = 79.3 bits (194), Expect = 2e-15
Identities = 61/186 (32%), Positives = 82/186 (44%), Gaps = 32/186 (17%)
Query: 50 EPGRAAAGGPGGAALGEAPPGRVAFAAVRSHHHEPA--GETGNGTSGAIY---------- 97
+PGR GP G PPG V + +P G G G SGAI
Sbjct: 71 KPGRTGKPGPPGPPGDPGPPGPVGPPGEKGEPGKPGPPGLPGAGGSGAISTATYTTVPRV 130
Query: 98 -----------------FDQVLVNEGGGFDRASGSFVAPVRGVYSFRFHV-VKVYNRQTV 139
FD V+ N G +D ASG F + G Y F +HV ++ + ++
Sbjct: 131 AFYAGLKNPHEGYEVLKFDDVVTNLGNNYDAASGKFTCNIPGTYFFTYHVLMRGGDGTSM 190
Query: 140 QVSLMLNTWPVISAFANDPDVTREAATSSVLLPLDPGDRVSLRLRRGNLLGG--WKYSSF 197
L N SA A D D + A++SV+L LD GD V ++L G GG KYS+F
Sbjct: 191 WADLCKNGQVRASAIAQDADQNYDYASNSVILHLDAGDEVFIKLDGGKAHGGNSNKYSTF 250
Query: 198 SGFLIF 203
SGF+I+
Sbjct: 251 SGFIIY 256
>gi|58801559 complement component 1, q subcomponent-like 3 [Homo
sapiens]
Length = 255
Score = 77.0 bits (188), Expect = 1e-14
Identities = 53/156 (33%), Positives = 77/156 (49%), Gaps = 13/156 (8%)
Query: 51 PGRAAAGGPGGAALGEAPPGRVAFAAVRSHHHEPAGETGNGTSGAIYFDQVLVNEGGGFD 110
PG AAG A P ++AF A HE + FD V+ N G +D
Sbjct: 108 PGLNAAGAISAATYSTVP--KIAFYAGLKRQHEGYE--------VLKFDDVVTNLGNHYD 157
Query: 111 RASGSFVAPVRGVYSFRFHVV-KVYNRQTVQVSLMLNTWPVISAFANDPDVTREAATSSV 169
+G F + G+Y F +HV+ + + ++ L N SA A D D + A++SV
Sbjct: 158 PTTGKFTCSIPGIYFFTYHVLMRGGDGTSMWADLCKNNQVRASAIAQDADQNYDYASNSV 217
Query: 170 LLPLDPGDRVSLRLRRGNLLGG--WKYSSFSGFLIF 203
+L L+PGD V ++L G GG KYS+FSGF+I+
Sbjct: 218 VLHLEPGDEVYIKLDGGKAHGGNNNKYSTFSGFIIY 253
>gi|154937344 complement component 1, q subcomponent-like 2 [Homo
sapiens]
Length = 287
Score = 72.8 bits (177), Expect = 2e-13
Identities = 43/110 (39%), Positives = 63/110 (57%), Gaps = 3/110 (2%)
Query: 98 FDQVLVNEGGGFDRASGSFVAPVRGVYSFRFHV-VKVYNRQTVQVSLMLNTWPVISAFAN 156
FD V+ N G +D +G F VRG+Y F +H+ ++ + ++ L N SA A
Sbjct: 177 FDDVVTNLGNHYDPTTGKFSCQVRGIYFFTYHILMRGGDGTSMWADLCKNGQVRASAIAQ 236
Query: 157 DPDVTREAATSSVLLPLDPGDRVSLRLRRGNLLGG--WKYSSFSGFLIFP 204
D D + A++SV+L LD GD V ++L G GG KYS+FSGFL++P
Sbjct: 237 DADQNYDYASNSVVLHLDSGDEVYVKLDGGKAHGGNNNKYSTFSGFLLYP 286
Score = 28.9 bits (63), Expect = 3.2
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 7/53 (13%)
Query: 20 LVLVLLALGAGWAQEGSEPVLLEGECLVVCEPGRAAAGG--PGGAALGEAPPG 70
L+ V L L A A G+ + G C ++C+P AA GG PG A PPG
Sbjct: 6 LIAVPLLLQA--APRGAAHYEMMGTCRMICDPYTAAPGGEPPGAKA---QPPG 53
>gi|13569919 C1q and tumor necrosis factor related protein 3 isoform
a [Homo sapiens]
Length = 246
Score = 68.2 bits (165), Expect = 5e-12
Identities = 63/197 (31%), Positives = 91/197 (46%), Gaps = 12/197 (6%)
Query: 10 PGPLHSPGLPLVLVLLALGAGWAQEGSEPVLLEGECLVVCEPGRAAAGGPGGAA--LGEA 67
PGP PG+P EG++ +G+ + G GP G G
Sbjct: 56 PGPPGPPGIPGNHGNNGNNGATGHEGAKGE--KGDKGDLGPRGERGQHGPKGEKGYPGIP 113
Query: 68 PPGRVAFAAVRSHHHEPAGETGNGTSGAIYFDQVLVNEGGGFDRASGSFVAPVRGVYSFR 127
P ++AF A + H N SG I F V N G FD +G F APV GVY F
Sbjct: 114 PELQIAFMASLATHFS------NQNSGII-FSSVETNIGNFFDVMTGRFGAPVSGVYFFT 166
Query: 128 FHVVKVYNRQTVQVSLMLNTWPVISAFANDPDVTREAATSSVLLPLDPGDRVSLRLRRGN 187
F ++K + + V V LM N V S ++ + + +++ +L L GD V LR+ G
Sbjct: 167 FSMMKHEDVEEVYVYLMHNGNTVFSMYSYEMKGKSDTSSNHAVLKLAKGDEVWLRMGNGA 226
Query: 188 LLGG-WKYSSFSGFLIF 203
L G ++S+F+GFL+F
Sbjct: 227 LHGDHQRFSTFAGFLLF 243
>gi|62739183 C1q and tumor necrosis factor related protein 3 isoform
b [Homo sapiens]
Length = 319
Score = 68.2 bits (165), Expect = 5e-12
Identities = 63/197 (31%), Positives = 91/197 (46%), Gaps = 12/197 (6%)
Query: 10 PGPLHSPGLPLVLVLLALGAGWAQEGSEPVLLEGECLVVCEPGRAAAGGPGGAA--LGEA 67
PGP PG+P EG++ +G+ + G GP G G
Sbjct: 129 PGPPGPPGIPGNHGNNGNNGATGHEGAKGE--KGDKGDLGPRGERGQHGPKGEKGYPGIP 186
Query: 68 PPGRVAFAAVRSHHHEPAGETGNGTSGAIYFDQVLVNEGGGFDRASGSFVAPVRGVYSFR 127
P ++AF A + H N SG I F V N G FD +G F APV GVY F
Sbjct: 187 PELQIAFMASLATHFS------NQNSGII-FSSVETNIGNFFDVMTGRFGAPVSGVYFFT 239
Query: 128 FHVVKVYNRQTVQVSLMLNTWPVISAFANDPDVTREAATSSVLLPLDPGDRVSLRLRRGN 187
F ++K + + V V LM N V S ++ + + +++ +L L GD V LR+ G
Sbjct: 240 FSMMKHEDVEEVYVYLMHNGNTVFSMYSYEMKGKSDTSSNHAVLKLAKGDEVWLRMGNGA 299
Query: 188 LLGG-WKYSSFSGFLIF 203
L G ++S+F+GFL+F
Sbjct: 300 LHGDHQRFSTFAGFLLF 316
>gi|14149712 C1q and tumor necrosis factor related protein 5
precursor [Homo sapiens]
Length = 243
Score = 66.6 bits (161), Expect = 1e-11
Identities = 53/157 (33%), Positives = 79/157 (50%), Gaps = 12/157 (7%)
Query: 52 GRAAAGGPGGAALGEAPPGRVAFAAVRSHHHEPAGETGNGTSGAIYFDQVLVNEGGGFDR 111
G A GP G A + P R AF+A RS P + + FD+VLVNE G +D
Sbjct: 84 GEAGPAGPTGPAGECSVPPRSAFSAKRSESRVPPP-----SDAPLPFDRVLVNEQGHYDA 138
Query: 112 ASGSFVAPVRGVYSFRFHVVKVYNRQTVQVSLMLNTWPVISAFANDPDVTREAATS-SVL 170
+G F V GVY F H VY R ++Q L+ N + S F + A+ S +
Sbjct: 139 VTGKFTCQVPGVYYFAVHAT-VY-RASLQFDLVKNGESIASFFQFFGGWPKPASLSGGAM 196
Query: 171 LPLDPGDRVSLRLRRGNLLGGWKY----SSFSGFLIF 203
+ L+P D+V +++ G+ +G + S+FSGFL++
Sbjct: 197 VRLEPEDQVWVQVGVGDYIGIYASIKTDSTFSGFLVY 233
>gi|148233912 C1q and tumor necrosis factor related protein 4 [Homo
sapiens]
Length = 329
Score = 62.4 bits (150), Expect = 3e-10
Identities = 65/190 (34%), Positives = 85/190 (44%), Gaps = 38/190 (20%)
Query: 18 LPLVLVLLALGAGWAQEGSEPVLLEGECLVVCEPGRAAAGGPGGAALGEAPPGRVAFAAV 77
LPL+L LL A WA G P GPG + L R AF+A
Sbjct: 2 LPLLLGLLGPAACWAL-GPTP-------------------GPGSSEL------RSAFSAA 35
Query: 78 RSHHHEPAGETGNGTSGAIYFDQVLVNEGGGFDRASGSFVAPVRGVYSFRFHVVKVYNRQ 137
R+ E E A+ FD+V VN GG FD A+G F V G Y F F K ++
Sbjct: 36 RTTPLEGTSEM------AVTFDKVYVNIGGDFDVATGQFRCRVPGAYFFSFTAGKAPHK- 88
Query: 138 TVQVSLMLNTWPVISAFANDPD---VTREAATSSVLLPLDPGDRVSLRLRRGNLLG-GWK 193
++ V L+ N + A A D R AA+ S +L LD GD V LRL G
Sbjct: 89 SLSVMLVRNR-DEVQALAFDEQRRPGARRAASQSAMLQLDYGDTVWLRLHGAPQYALGAP 147
Query: 194 YSSFSGFLIF 203
++FSG+L++
Sbjct: 148 GATFSGYLVY 157
Score = 60.8 bits (146), Expect = 8e-10
Identities = 49/142 (34%), Positives = 68/142 (47%), Gaps = 6/142 (4%)
Query: 68 PPGRVAFAAVRSHHHEPAGETGNGTSGAIYFDQVLVNEGGGFDRASGSFVAPVRGVYSFR 127
P R AF+A R+ + + FD VN GG FD A+G F + G Y F
Sbjct: 173 PEPRSAFSAARTRSLVGSDAGPGPRHQPLAFDTEFVNIGGDFDAAAGVFRCRLPGAYFFS 232
Query: 128 FHVVKVYNRQTVQVSLMLNTWPVISAFAND-PDVTREAATSSVLLPLDPGDRVSLRLRRG 186
F + K+ R+T+ V LM N V + +D RE + SV+L L GD V L
Sbjct: 233 FTLGKL-PRKTLSVKLMKNRDEVQAMIYDDGASRRREMQSQSVMLALRRGDAVWLLSHDH 291
Query: 187 NLLGGW----KYSSFSGFLIFP 204
+ G + KY +FSGFL++P
Sbjct: 292 DGYGAYSNHGKYITFSGFLVYP 313
>gi|56786155 complement component 1, q subcomponent, C chain
precursor [Homo sapiens]
Length = 245
Score = 58.2 bits (139), Expect = 5e-09
Identities = 58/206 (28%), Positives = 81/206 (39%), Gaps = 24/206 (11%)
Query: 9 LPGPLHSPGLPLVLVLLALGAGWAQEGSEPVLL--EGECLVVCEPGRAAAGGPGGAALGE 66
LPGP PG+P + + G + EP L G+ + PG GP G
Sbjct: 53 LPGPKGEPGIPAIPGI----RGPKGQKGEPGLPGHPGKNGPMGPPGMPGVPGPMGIPGEP 108
Query: 67 APPGRV------AFAAVRSHHHEPAGETGNGTSGAIYFDQVLVNEGGGFDRASGSFVAPV 120
GR F R H PA + I F+ VL N G +D ++G F V
Sbjct: 109 GEEGRYKQKFQSVFTVTRQTHQPPA------PNSLIRFNAVLTNPQGDYDTSTGKFTCKV 162
Query: 121 RGVYSFRFHVVKVYNRQTVQVSLMLNTWPVISAFANDPDVTREAATSSVLLPLDPGDRVS 180
G+Y F +H N L+ + + F T + + VLL L G+ V
Sbjct: 163 PGLYYFVYHASHTAN----LCVLLYRSGVKVVTFCGHTSKTNQVNSGGVLLRLQVGEEVW 218
Query: 181 LRLRRGNLLGGWKYSS--FSGFLIFP 204
L + + G + S FSGFL+FP
Sbjct: 219 LAVNDYYDMVGIQGSDSVFSGFLLFP 244
>gi|166235903 complement component 1, q subcomponent, C chain
precursor [Homo sapiens]
Length = 245
Score = 58.2 bits (139), Expect = 5e-09
Identities = 58/206 (28%), Positives = 81/206 (39%), Gaps = 24/206 (11%)
Query: 9 LPGPLHSPGLPLVLVLLALGAGWAQEGSEPVLL--EGECLVVCEPGRAAAGGPGGAALGE 66
LPGP PG+P + + G + EP L G+ + PG GP G
Sbjct: 53 LPGPKGEPGIPAIPGI----RGPKGQKGEPGLPGHPGKNGPMGPPGMPGVPGPMGIPGEP 108
Query: 67 APPGRV------AFAAVRSHHHEPAGETGNGTSGAIYFDQVLVNEGGGFDRASGSFVAPV 120
GR F R H PA + I F+ VL N G +D ++G F V
Sbjct: 109 GEEGRYKQKFQSVFTVTRQTHQPPA------PNSLIRFNAVLTNPQGDYDTSTGKFTCKV 162
Query: 121 RGVYSFRFHVVKVYNRQTVQVSLMLNTWPVISAFANDPDVTREAATSSVLLPLDPGDRVS 180
G+Y F +H N L+ + + F T + + VLL L G+ V
Sbjct: 163 PGLYYFVYHASHTAN----LCVLLYRSGVKVVTFCGHTSKTNQVNSGGVLLRLQVGEEVW 218
Query: 181 LRLRRGNLLGGWKYSS--FSGFLIFP 204
L + + G + S FSGFL+FP
Sbjct: 219 LAVNDYYDMVGIQGSDSVFSGFLLFP 244
>gi|32895368 alpha 1 type VIII collagen precursor [Homo sapiens]
Length = 744
Score = 57.4 bits (137), Expect = 8e-09
Identities = 62/236 (26%), Positives = 93/236 (39%), Gaps = 38/236 (16%)
Query: 6 PHWLPGPLHSPGLPLVLVLLALGAGWAQEGSEPVLLEGECLVVCEPGRAAAGGPGG---- 61
P +PGP PGLP +G P G +PG GP G
Sbjct: 511 PPGIPGPKGEPGLPGPPGFPGIGKPGVAGLHGPPGKPGALGPQGQPGLPGPPGPPGPPGP 570
Query: 62 -AALGEAPPGRV-----------------AFAAVRSHHHEPAGETGNGTS---------- 93
A + PP + A+ A + + PA E T+
Sbjct: 571 PAVMPPTPPPQGEYLPDMGLGIDGVKPPHAYGAKKGKNGGPAYEMPAFTAELTAPFPPVG 630
Query: 94 GAIYFDQVLVNEGGGFDRASGSFVAPVRGVYSFRFHVVKVYNRQTVQVSLMLNTWPVISA 153
+ F+++L N ++ +G F V GVY F +HV V V+L N PV+
Sbjct: 631 APVKFNKLLYNGRQNYNPQTGIFTCEVPGVYYFAYHV--HCKGGNVWVALFKNNEPVMYT 688
Query: 154 FANDPDVTREAATSSVLLPLDPGDRVSLRL----RRGNLLGGWKYSSFSGFLIFPL 205
+ + A+ S +L L PGDRV L++ G G + +SSFSG+L++P+
Sbjct: 689 YDEYKKGFLDQASGSAVLLLRPGDRVFLQMPSEQAAGLYAGQYVHSSFSGYLLYPM 744
>gi|17738302 alpha 1 type VIII collagen precursor [Homo sapiens]
Length = 744
Score = 57.4 bits (137), Expect = 8e-09
Identities = 62/236 (26%), Positives = 93/236 (39%), Gaps = 38/236 (16%)
Query: 6 PHWLPGPLHSPGLPLVLVLLALGAGWAQEGSEPVLLEGECLVVCEPGRAAAGGPGG---- 61
P +PGP PGLP +G P G +PG GP G
Sbjct: 511 PPGIPGPKGEPGLPGPPGFPGIGKPGVAGLHGPPGKPGALGPQGQPGLPGPPGPPGPPGP 570
Query: 62 -AALGEAPPGRV-----------------AFAAVRSHHHEPAGETGNGTS---------- 93
A + PP + A+ A + + PA E T+
Sbjct: 571 PAVMPPTPPPQGEYLPDMGLGIDGVKPPHAYGAKKGKNGGPAYEMPAFTAELTAPFPPVG 630
Query: 94 GAIYFDQVLVNEGGGFDRASGSFVAPVRGVYSFRFHVVKVYNRQTVQVSLMLNTWPVISA 153
+ F+++L N ++ +G F V GVY F +HV V V+L N PV+
Sbjct: 631 APVKFNKLLYNGRQNYNPQTGIFTCEVPGVYYFAYHV--HCKGGNVWVALFKNNEPVMYT 688
Query: 154 FANDPDVTREAATSSVLLPLDPGDRVSLRL----RRGNLLGGWKYSSFSGFLIFPL 205
+ + A+ S +L L PGDRV L++ G G + +SSFSG+L++P+
Sbjct: 689 YDEYKKGFLDQASGSAVLLLRPGDRVFLQMPSEQAAGLYAGQYVHSSFSGYLLYPM 744
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 57.0 bits (136), Expect = 1e-08
Identities = 51/159 (32%), Positives = 71/159 (44%), Gaps = 16/159 (10%)
Query: 57 GGPGGAALGEAPPGRVAFAAVRSHHHEPAGETGNGTSG------AIYFDQVLVNEGGGFD 110
GG GA LG+ G+ F H T TS + FD+ L N G++
Sbjct: 549 GGVEGAVLGKG--GKPQFGLGELSAHATPAFTAVLTSPFPASGMPVKFDRTLYNGHSGYN 606
Query: 111 RASGSFVAPVRGVYSFRFHV-VKVYNRQTVQVSLMLNTWPVISAFANDPDVTREAATSSV 169
A+G F PV GVY F +HV VK N V V+L N P + + A+
Sbjct: 607 PATGIFTCPVGGVYYFAYHVHVKGTN---VWVALYKNNVPATYTYDEYKKGYLDQASGGA 663
Query: 170 LLPLDPGDRVSLRLRRGNLLGGWK----YSSFSGFLIFP 204
+L L P D+V +++ G + +SSFSGFL+ P
Sbjct: 664 VLQLRPNDQVWVQMPSDQANGLYSTEYIHSSFSGFLLCP 702
>gi|116686136 C1q and tumor necrosis factor related protein 8 [Homo
sapiens]
Length = 252
Score = 55.5 bits (132), Expect = 3e-08
Identities = 59/181 (32%), Positives = 80/181 (44%), Gaps = 22/181 (12%)
Query: 42 EGECLVVCEPGRAAAGGPGGAA--------LGEA-PPG---RVAFAAVRSHHHEPAGETG 89
+GE V GR+ GP GA G+ PPG R A+AA E G
Sbjct: 72 KGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPGAACRRAYAAFSVGRRE--GLHS 129
Query: 90 NGTSGAIYFDQVLVNEGGGFDRASGSFVAPVRGVYSFRFHVVKVYNRQTVQVSLMLNTWP 149
+ A+ FD LVN G FD A+G F+ V GVY + V +N + + +MLN P
Sbjct: 130 SDHFQAVPFDTELVNLDGAFDLAAGRFLCTVPGVYFLSLN-VHTWNYKETYLHIMLNRRP 188
Query: 150 VISAFANDPDVTREAATSSVLLPLDPGDRVSLRL----RRGNLLG--GWKYSSFSGFLIF 203
+A P S++L L GD V +R+ R + G G Y +FSG L+
Sbjct: 189 AAVLYA-QPSERSVMQAQSLMLLLAAGDAVWVRMFQRDRDNAIYGEHGDLYITFSGHLVK 247
Query: 204 P 204
P
Sbjct: 248 P 248
>gi|56847616 C1q and tumor necrosis factor related protein 9B [Homo
sapiens]
Length = 333
Score = 55.1 bits (131), Expect = 4e-08
Identities = 40/114 (35%), Positives = 62/114 (54%), Gaps = 10/114 (8%)
Query: 96 IYFDQVLVNEGGGFDRASGSFVAPVRGVYSFRFHVVKVYNRQTVQVSLMLNTWPVISAFA 155
I FD++L NE +D A G F + GVY F +H+ V++R VQVSL+ N ++
Sbjct: 221 IKFDKILYNEFNHYDTAVGKFTCHIAGVYYFTYHIT-VFSR-NVQVSLVKNGVKIL--HT 276
Query: 156 NDPDVTRE-AATSSVLLPLDPGDRVSLRLRRGNLLGGW-----KYSSFSGFLIF 203
D V+ E A+ S++L L GD + L++ G G ++F+GFL+F
Sbjct: 277 RDAYVSSEDQASGSIVLQLKLGDEMWLQVTGGERFNGLFADEDDDTTFTGFLLF 330
>gi|65301115 C1q and tumor necrosis factor related protein 9 [Homo
sapiens]
Length = 333
Score = 55.1 bits (131), Expect = 4e-08
Identities = 39/116 (33%), Positives = 62/116 (53%), Gaps = 14/116 (12%)
Query: 96 IYFDQVLVNEGGGFDRASGSFVAPVRGVYSFRFHVVKVYNRQTVQVSLMLNTWPVI---S 152
I FD++L NE +D A+G F + GVY F +H+ V++R VQVSL+ N ++
Sbjct: 221 IKFDKILYNEFNHYDTAAGKFTCHIAGVYYFTYHIT-VFSR-NVQVSLVKNGVKILHTKD 278
Query: 153 AFANDPDVTREAATSSVLLPLDPGDRVSLRLRRGNLLGGW-----KYSSFSGFLIF 203
A+ + D A+ ++L L GD V L++ G G ++F+GFL+F
Sbjct: 279 AYMSSED----QASGGIVLQLKLGDEVWLQVTGGERFNGLFADEDDDTTFTGFLLF 330
>gi|32967300 C1q and tumor necrosis factor related protein 6 [Homo
sapiens]
Length = 278
Score = 55.1 bits (131), Expect = 4e-08
Identities = 52/159 (32%), Positives = 74/159 (46%), Gaps = 10/159 (6%)
Query: 50 EPGRAAAGGPGGAALGEAPPGRVAFAAVRSHHHEPAGETGNGTSGAIYFDQVLVNEGGGF 109
EPG + G G P + F A S + A +G + F++V VN G F
Sbjct: 119 EPGPQGSKGDKGEMGSPGAPCQKRFFAF-SVGRKTALHSGEDFQ-TLLFERVFVNLDGCF 176
Query: 110 DRASGSFVAPVRGVYSFRFHVVKVYNRQTVQVSLMLNTWPVISAFANDPDVTREAATSSV 169
D A+G F AP+RG+Y F + V +N + V +M N + +A P + SV
Sbjct: 177 DMATGQFAAPLRGIYFFSLN-VHSWNYKETYVHIMHNQKEAVILYA-QPSERSIMQSQSV 234
Query: 170 LLPLDPGDRVSLRL---RRGNLLGG---WKYSSFSGFLI 202
+L L GDRV +RL +R N + Y +FSG LI
Sbjct: 235 MLDLAYGDRVWVRLFKRQRENAIYSNDFDTYITFSGHLI 273
>gi|32967294 C1q and tumor necrosis factor related protein 6 [Homo
sapiens]
Length = 278
Score = 55.1 bits (131), Expect = 4e-08
Identities = 52/159 (32%), Positives = 74/159 (46%), Gaps = 10/159 (6%)
Query: 50 EPGRAAAGGPGGAALGEAPPGRVAFAAVRSHHHEPAGETGNGTSGAIYFDQVLVNEGGGF 109
EPG + G G P + F A S + A +G + F++V VN G F
Sbjct: 119 EPGPQGSKGDKGEMGSPGAPCQKRFFAF-SVGRKTALHSGEDFQ-TLLFERVFVNLDGCF 176
Query: 110 DRASGSFVAPVRGVYSFRFHVVKVYNRQTVQVSLMLNTWPVISAFANDPDVTREAATSSV 169
D A+G F AP+RG+Y F + V +N + V +M N + +A P + SV
Sbjct: 177 DMATGQFAAPLRGIYFFSLN-VHSWNYKETYVHIMHNQKEAVILYA-QPSERSIMQSQSV 234
Query: 170 LLPLDPGDRVSLRL---RRGNLLGG---WKYSSFSGFLI 202
+L L GDRV +RL +R N + Y +FSG LI
Sbjct: 235 MLDLAYGDRVWVRLFKRQRENAIYSNDFDTYITFSGHLI 273
>gi|87298828 complement component 1, q subcomponent, B chain
precursor [Homo sapiens]
Length = 253
Score = 54.7 bits (130), Expect = 5e-08
Identities = 46/158 (29%), Positives = 71/158 (44%), Gaps = 13/158 (8%)
Query: 51 PGRAAAGGPGGAALGEAPPGRVAFAAVRSHHHEPAGETGNGTSGAIYFDQVLVNEGGGFD 110
PG A GP G + ++AF+A R+ + + I FD V+ N ++
Sbjct: 101 PGAPGAPGPKGESGDYKATQKIAFSATRTINVPLRRDQ------TIRFDHVITNMNNNYE 154
Query: 111 RASGSFVAPVRGVYSFRFHVVKVYNRQTVQVSLMLNTWPV--ISAFANDPDVTREAATSS 168
SG F V G+Y F +H +R + V+LM + F + T + T
Sbjct: 155 PRSGKFTCKVPGLYYFTYH---ASSRGNLCVNLMRGRERAQKVVTFCDYAYNTFQVTTGG 211
Query: 169 VLLPLDPGDRVSLRLRRGNLLGGWK--YSSFSGFLIFP 204
++L L+ G+ V L+ N L G + S FSGFL+FP
Sbjct: 212 MVLKLEQGENVFLQATDKNSLLGMEGANSIFSGFLLFP 249
>gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]
Length = 680
Score = 53.1 bits (126), Expect = 2e-07
Identities = 59/202 (29%), Positives = 84/202 (41%), Gaps = 32/202 (15%)
Query: 9 LPGPLHSPGLPLVLVLLALGAGWAQEGSEPVLLEGECLVVCEPGRAAAGGPGGAALGEAP 68
LPGP PG P V+ G+ + G P L G LV G G P A
Sbjct: 506 LPGPPGPPGPPGQAVM---PEGFIKAGQRPSL-SGTPLVSANQG--VTGMPVSA------ 553
Query: 69 PGRVAFAAVRSHHHEPAGETGNGTSGAIYFDQVLVNEGGGFDRASGSFVAPVRGVYSFRF 128
F + S + G I FD++L N +D +G F + G+Y F +
Sbjct: 554 -----FTVILSKAYPAIGTP-------IPFDKILYNRQQHYDPRTGIFTCQIPGIYYFSY 601
Query: 129 HV-VKVYNRQTVQVSLMLNTWPVISAFANDPDVTREAATSSVLLPLDPGDRVSLRL---- 183
HV VK + V V L N PV+ + + A+ S ++ L D+V L+L
Sbjct: 602 HVHVKGTH---VWVGLYKNGTPVMYTYDEYTKGYLDQASGSAIIDLTENDQVWLQLPNAE 658
Query: 184 RRGNLLGGWKYSSFSGFLIFPL 205
G + +SSFSGFL+ P+
Sbjct: 659 SNGLYSSEYVHSSFSGFLVAPM 680
>gi|94818738 C1q and tumor necrosis factor related protein 2 [Homo
sapiens]
Length = 330
Score = 52.8 bits (125), Expect = 2e-07
Identities = 46/163 (28%), Positives = 71/163 (43%), Gaps = 13/163 (7%)
Query: 51 PGRAAAGGPGGAALGEAPPGRVAFAAVRSHHHEPAGETGNGTSGA-----IYFDQVLVNE 105
PG+ G G + PG + S H + A S I FD++L+NE
Sbjct: 162 PGKHGTPGKKGPKGKKGEPGLPGPCSCGSGHTKSAFSVAVTKSYPRERLPIKFDKILMNE 221
Query: 106 GGGFDRASGSFVAPVRGVYSFRFHVVKVYNRQTVQVSLMLNTWPVISAFANDPDVTREAA 165
GG ++ +SG FV V G+Y F + + + + + L+ N I F + + A
Sbjct: 222 GGHYNASSGKFVCGVPGIYYFTYDITLA--NKHLAIGLVHNGQYRIRTFDANTG-NHDVA 278
Query: 166 TSSVLLPLDPGDRVSLRLRRGNLLG-----GWKYSSFSGFLIF 203
+ S +L L GD V L++ G W S F+GFLI+
Sbjct: 279 SGSTILALKQGDEVWLQIFYSEQNGLFYDPYWTDSLFTGFLIY 321
>gi|7705753 complement component 1, q subcomponent, A chain
precursor [Homo sapiens]
Length = 245
Score = 50.1 bits (118), Expect = 1e-06
Identities = 49/176 (27%), Positives = 77/176 (43%), Gaps = 33/176 (18%)
Query: 51 PGRAAAGGPGGAALGEAPPG---------------RVAFAAVRSHHHEPAGETGNGTSGA 95
PG+ GP G PG R AF+A+R + P G GN
Sbjct: 79 PGKVGYPGPSGPLGARGIPGIKGTKGSPGNIKDQPRPAFSAIR--RNPPMG--GN----V 130
Query: 96 IYFDQVLVNEGGGFDRASGSFVAPVRGVYSFRFHVVKVYNRQTVQVSLMLNTWPVISAFA 155
+ FD V+ N+ + SG FV V G Y F F V+ + + +S++ ++ +
Sbjct: 131 VIFDTVITNQEEPYQNHSGRFVCTVPGYYYFTFQVLSQWE---ICLSIVSSSRGQVRRSL 187
Query: 156 NDPDVTR----EAATSSVLLPLDPGDRVSLRL--RRGNLLGGWKYSS-FSGFLIFP 204
D T + + ++L L GD+V + ++G++ G + S FSGFLIFP
Sbjct: 188 GFCDTTNKGLFQVVSGGMVLQLQQGDQVWVEKDPKKGHIYQGSEADSVFSGFLIFP 243
>gi|4757760 adiponectin precursor [Homo sapiens]
Length = 244
Score = 47.8 bits (112), Expect = 7e-06
Identities = 33/113 (29%), Positives = 59/113 (52%), Gaps = 7/113 (6%)
Query: 96 IYFDQVLVNEGGGFDRASGSFVAPVRGVYSFRFHVVKVYNRQTVQVSLMLNTWPVISAFA 155
I F ++ N+ +D ++G F + G+Y F +H+ VY + V+VSL ++ +
Sbjct: 130 IRFTKIFYNQQNHYDGSTGKFHCNIPGLYYFAYHIT-VYMKD-VKVSLFKKDKAMLFTYD 187
Query: 156 NDPDVTREAATSSVLLPLDPGDRVSLRL-----RRGNLLGGWKYSSFSGFLIF 203
+ + A+ SVLL L+ GD+V L++ R G S+F+GFL++
Sbjct: 188 QYQENNVDQASGSVLLHLEVGDQVWLQVYGEGERNGLYADNDNDSTFTGFLLY 240
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.140 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,363,063
Number of Sequences: 37866
Number of extensions: 496711
Number of successful extensions: 2396
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 2154
Number of HSP's gapped (non-prelim): 246
length of query: 205
length of database: 18,247,518
effective HSP length: 97
effective length of query: 108
effective length of database: 14,574,516
effective search space: 1574047728
effective search space used: 1574047728
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.