Guide to the Human Genome
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Name: CBLN1 Sequence: fasta or formatted (193aa) NCBI GI: 4757922
Description:

cerebellin 1 precursor

Referenced in:

Cerebellum
Complement

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3         14           2
 C cysteine            1.0          2           1
 D aspartate           3.6          7           1
 E glutamate           5.2         10           1
 F phenylalanine       5.2         10           1
 G glycine             9.3         18           2
 H histidine           1.0          2           1
 I isoleucine          5.7         11           2
 K lysine              3.6          7           1
 L leucine             9.8         19           4
 M methionine          3.1          6           1
 N asparagine          6.2         12           2
 P proline             4.1          8           1
 Q glutamine           3.1          6           1
 R arginine            5.2         10           1
 S serine              8.8         17           1
 T threonine           5.2         10           1
 V valine              8.3         16           2
 W tryptophan          1.6          3           1
 Y tyrosine            2.6          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cerebellin 1 precursor 
CBLN2                 0.754   cerebellin 2 precursor 
CBLN4                 0.680   cerebellin 4 precursor 
CBLN3                 0.525   cerebellin 3 precursor 
CAPRIN2               0.207   C1q domain containing 1 isoform 1 
CAPRIN2               0.207   C1q domain containing 1 isoform 3 
CAPRIN2               0.207   C1q domain containing 1 isoform 2 
C1QL4                 0.166   complement component 1, q subcomponent-like 4 
C1QL2                 0.163   complement component 1, q subcomponent-like 2 [Homo...
C1QL3                 0.157   complement component 1, q subcomponent-like 3 
C1QL1                 0.152   complement component 1, q subcomponent-like 1 
C1QTNF3               0.138   C1q and tumor necrosis factor related protein 3 isof...
C1QTNF3               0.138   C1q and tumor necrosis factor related protein 3 isof...
C1QTNF9               0.097   C1q and tumor necrosis factor related protein 9 [Hom...
C1QTNF4               0.094   C1q and tumor necrosis factor related protein 4 [Ho...
C1QB                  0.086   complement component 1, q subcomponent, B chain prec...
C1QTNF9B              0.086   C1q and tumor necrosis factor related protein 9B [Ho...
C1QTNF5               0.086   C1q and tumor necrosis factor related protein 5 prec...
C1QC                  0.077   complement component 1, q subcomponent, C chain prec...
C1QC                  0.077   complement component 1, q subcomponent, C chain pre...
C1QTNF2               0.072   C1q and tumor necrosis factor related protein 2 [Hom...
COL10A1               0.072   type X collagen alpha 1 precursor 
C1QA                  0.066   complement component 1, q subcomponent, A chain precu...
COL8A2                0.066   collagen, type VIII, alpha 2 
COL8A1                0.064   alpha 1 type VIII collagen precursor 
COL8A1                0.064   alpha 1 type VIII collagen precursor 
ADIPOQ                0.061   adiponectin precursor 
C1QTNF7               0.058   C1q and tumor necrosis factor related protein 7 isof...
C1QTNF7               0.058   C1q and tumor necrosis factor related protein 7 iso...
C1QTNF7               0.058   C1q and tumor necrosis factor related protein 7 iso...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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