Guide to the Human Genome
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Name: ACTR10 Sequence: fasta or formatted (417aa) NCBI GI: 8923712
Description:

uncharacterized hypothalamus protein HARP11

Referenced in:

Actin and Related Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         23           2
 C cysteine            2.4         10           1
 D aspartate           3.8         16           1
 E glutamate           7.2         30           2
 F phenylalanine       3.6         15           1
 G glycine             7.4         31           2
 H histidine           1.9          8           1
 I isoleucine          6.7         28           2
 K lysine              6.0         25           2
 L leucine            12.5         52           2
 M methionine          2.2          9           2
 N asparagine          3.6         15           2
 P proline             7.0         29           3
 Q glutamine           2.9         12           1
 R arginine            5.0         21           2
 S serine              6.0         25           1
 T threonine           4.8         20           1
 V valine              7.7         32           2
 W tryptophan          0.7          3           1
 Y tyrosine            3.1         13           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   uncharacterized hypothalamus protein HARP11 
ACTG1                 0.124   actin, gamma 1 propeptide 
ACTC1                 0.123   cardiac muscle alpha actin 1 proprotein 
ACTB                  0.123   beta actin 
POTEF                 0.122   prostate, ovary, testis expressed protein on chromo...
ACTA1                 0.122   actin, alpha 1, skeletal muscle 
ACTA2                 0.120   alpha 2 actin 
ACTA2                 0.120   alpha 2 actin 
ACTG2                 0.120   actin, gamma 2 propeptide 
POTEE                 0.119   protein expressed in prostate, ovary, testis, and p...
ACTBL3                0.119   PREDICTED: actin, beta-like 3 
ACTBL3                0.118   PREDICTED: actin, beta-like 3 
ACTBL3                0.118   PREDICTED: kappa-actin 
LOC653269             0.117   PREDICTED: similar to protein expressed in prostate...
LOC653269             0.117   PREDICTED: similar to protein expressed in prostate,...
LOC653781             0.114   PREDICTED: similar to protein expressed in prostate...
ACTBL2                0.113   actin, beta-like 2 
ACTRT1                0.096   actin-related protein T1 
ACTRT2                0.087   actin-related protein M2 
ACTL7A                0.087   actin-like 7A 
ACTR1B                0.085   ARP1 actin-related protein 1 homolog B, centractin b...
ACTR3B                0.080   actin-related protein 3-beta isoform 1 
ACTR2                 0.079   actin-related protein 2 isoform b 
ACTR1A                0.079   ARP1 actin-related protein 1 homolog A, centractin al...
ACTR2                 0.077   actin-related protein 2 isoform a 
LOC100128069          0.076   PREDICTED: similar to alpha actin 
ACTL9                 0.072   actin-like 9 
ACTR3                 0.072   ARP3 actin-related protein 3 homolog 
ACTL7B                0.070   actin-like 7B 
ARPM1                 0.064   actin related protein M1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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