Guide to the Human Genome
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Name: ACTRT2 Sequence: fasta or formatted (377aa) NCBI GI: 29893808
Description:

actin-related protein M2

Referenced in:

Actin and Related Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         27           2
 C cysteine            1.9          7           1
 D aspartate           5.6         21           2
 E glutamate           7.2         27           2
 F phenylalanine       5.6         21           1
 G glycine             7.2         27           2
 H histidine           2.7         10           1
 I isoleucine          4.2         16           2
 K lysine              5.8         22           3
 L leucine            11.9         45           3
 M methionine          1.9          7           1
 N asparagine          2.1          8           1
 P proline             6.1         23           2
 Q glutamine           4.2         16           2
 R arginine            3.4         13           2
 S serine              8.0         30           3
 T threonine           4.8         18           2
 V valine              6.9         26           2
 W tryptophan          1.6          6           1
 Y tyrosine            1.9          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   actin-related protein M2 
ACTRT1                0.748   actin-related protein T1 
ACTB                  0.470   beta actin 
ACTG1                 0.468   actin, gamma 1 propeptide 
ACTA2                 0.465   alpha 2 actin 
ACTA2                 0.465   alpha 2 actin 
ACTG2                 0.461   actin, gamma 2 propeptide 
ACTA1                 0.457   actin, alpha 1, skeletal muscle 
ACTC1                 0.457   cardiac muscle alpha actin 1 proprotein 
ACTBL2                0.455   actin, beta-like 2 
ACTBL3                0.442   PREDICTED: actin, beta-like 3 
ACTBL3                0.442   PREDICTED: kappa-actin 
ACTBL3                0.440   PREDICTED: actin, beta-like 3 
LOC653269             0.440   PREDICTED: similar to protein expressed in prostate...
LOC653269             0.440   PREDICTED: similar to protein expressed in prostate,...
ARPM1                 0.440   actin related protein M1 
POTEF                 0.437   prostate, ovary, testis expressed protein on chromo...
POTEE                 0.436   protein expressed in prostate, ovary, testis, and p...
LOC653781             0.436   PREDICTED: similar to protein expressed in prostate...
ACTR1B                0.390   ARP1 actin-related protein 1 homolog B, centractin b...
ACTR1A                0.384   ARP1 actin-related protein 1 homolog A, centractin al...
ACTL7B                0.336   actin-like 7B 
ACTL9                 0.334   actin-like 9 
LOC100128069          0.332   PREDICTED: similar to alpha actin 
ACTL7A                0.323   actin-like 7A 
LOC100128069          0.318   PREDICTED: similar to Actin, alpha 1, skeletal musc...
ACTR2                 0.311   actin-related protein 2 isoform b 
ACTR2                 0.307   actin-related protein 2 isoform a 
ACTR3B                0.212   actin-related protein 3-beta isoform 1 
ACTL6B                0.211   actin-like 6B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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