Guide to the Human Genome
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Name: ACTL7A Sequence: fasta or formatted (435aa) NCBI GI: 5729720
Description:

actin-like 7A

Referenced in:

Actin and Related Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         26           2
 C cysteine            2.5         11           2
 D aspartate           4.1         18           1
 E glutamate           6.9         30           2
 F phenylalanine       3.7         16           2
 G glycine             7.4         32           2
 H histidine           2.8         12           1
 I isoleucine          4.1         18           2
 K lysine              6.0         26           3
 L leucine             9.9         43           2
 M methionine          3.0         13           1
 N asparagine          3.4         15           2
 P proline             6.9         30           2
 Q glutamine           4.6         20           1
 R arginine            4.6         20           2
 S serine              6.2         27           2
 T threonine           6.2         27           2
 V valine              6.9         30           3
 W tryptophan          1.4          6           1
 Y tyrosine            3.4         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   actin-like 7A 
ACTL7B                0.502   actin-like 7B 
ACTG1                 0.351   actin, gamma 1 propeptide 
ACTB                  0.350   beta actin 
ACTG2                 0.345   actin, gamma 2 propeptide 
ACTA2                 0.344   alpha 2 actin 
ACTA2                 0.344   alpha 2 actin 
ACTC1                 0.341   cardiac muscle alpha actin 1 proprotein 
ACTBL2                0.341   actin, beta-like 2 
ACTA1                 0.338   actin, alpha 1, skeletal muscle 
ACTL9                 0.338   actin-like 9 
ACTBL3                0.336   PREDICTED: actin, beta-like 3 
ACTBL3                0.336   PREDICTED: kappa-actin 
ACTBL3                0.336   PREDICTED: actin, beta-like 3 
LOC653269             0.333   PREDICTED: similar to protein expressed in prostate...
LOC653269             0.333   PREDICTED: similar to protein expressed in prostate,...
LOC653781             0.331   PREDICTED: similar to protein expressed in prostate...
POTEE                 0.330   protein expressed in prostate, ovary, testis, and p...
POTEF                 0.327   prostate, ovary, testis expressed protein on chromo...
ACTR1B                0.279   ARP1 actin-related protein 1 homolog B, centractin b...
ACTR1A                0.278   ARP1 actin-related protein 1 homolog A, centractin al...
ACTRT2                0.274   actin-related protein M2 
ACTRT1                0.244   actin-related protein T1 
ARPM1                 0.244   actin related protein M1 
LOC100128069          0.242   PREDICTED: similar to alpha actin 
LOC100128069          0.229   PREDICTED: similar to Actin, alpha 1, skeletal musc...
ACTR2                 0.227   actin-related protein 2 isoform b 
ACTR2                 0.225   actin-related protein 2 isoform a 
ACTL8                 0.167   actin-like 8 
ACTR3B                0.159   actin-related protein 3-beta isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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