Guide to the Human Genome
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Name: WDR70 Sequence: fasta or formatted (654aa) NCBI GI: 8922301
Description:

WD repeat domain 70

Referenced in:

WD Repeat Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7         37           3
 C cysteine            2.0         13           2
 D aspartate           6.9         45           2
 E glutamate           8.4         55          11
 F phenylalanine       3.5         23           2
 G glycine             6.9         45           2
 H histidine           2.3         15           1
 I isoleucine          4.1         27           2
 K lysine              7.8         51           2
 L leucine             5.8         38           1
 M methionine          2.8         18           1
 N asparagine          3.2         21           1
 P proline             6.3         41           3
 Q glutamine           4.0         26           1
 R arginine            6.0         39           2
 S serine              8.6         56           3
 T threonine           6.9         45           2
 V valine              5.7         37           2
 W tryptophan          1.2          8           1
 Y tyrosine            2.1         14           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   WD repeat domain 70 
WDR5                  0.029   WD repeat domain 5 
WDR5                  0.029   WD repeat domain 5 
WDR69                 0.028   WD repeat domain 69 
GRWD1                 0.027   glutamate-rich WD repeat containing 1 
KATNB1                0.026   katanin p80 subunit B 1 
SNRNP40               0.026   WD repeat domain 57 (U5 snRNP specific) 
WDR51B                0.026   WD repeat domain 51B 
APAF1                 0.024   apoptotic peptidase activating factor 1 isoform d [H...
APAF1                 0.024   apoptotic peptidase activating factor 1 isoform b [Ho...
TEP1                  0.023   telomerase-associated protein 1 
RBBP4                 0.023   retinoblastoma binding protein 4 isoform c 
RBBP4                 0.023   retinoblastoma binding protein 4 isoform b 
RBBP4                 0.023   retinoblastoma binding protein 4 isoform a 
ATG16L1               0.023   APG16 autophagy 16-like isoform 1 
ATG16L1               0.023   APG16 autophagy 16-like isoform 2 
RBBP7                 0.022   retinoblastoma binding protein 7 
AAMP                  0.021   angio-associated, migratory cell protein 
TAF5                  0.021   TBP-associated factor 5 
SETD1B                0.020   SET domain containing 1B 
DCAF8L2               0.020   DDB1 and CUL4 associated factor 8-like 2 
TAF5L                 0.020   PCAF associated factor 65 beta isoform a 
WDR5B                 0.020   WD repeat domain 5B 
WDR42A                0.020   H326 
SMU1                  0.019   smu-1 suppressor of mec-8 and unc-52 homolog 
PEX7                  0.019   peroxisomal biogenesis factor 7 
WDR38                 0.019   WD repeat domain 38 
DDB2                  0.018   damage-specific DNA binding protein 2 
WDR51A                0.018   WD repeat domain 51A isoform 3 
WDR51A                0.018   WD repeat domain 51A isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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