Guide to the Human Genome
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Name: RBBP7 Sequence: fasta or formatted (425aa) NCBI GI: 4506439
Description:

retinoblastoma binding protein 7

Referenced in:

Histones, Related Proteins, and Modifying Enzymes
RB1 and Related Functions
WD Repeat Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         26           1
 C cysteine            1.4          6           1
 D aspartate           7.8         33           2
 E glutamate           8.5         36           2
 F phenylalanine       3.3         14           1
 G glycine             5.9         25           2
 H histidine           5.4         23           1
 I isoleucine          5.2         22           2
 K lysine              5.6         24           2
 L leucine             8.2         35           2
 M methionine          1.6          7           1
 N asparagine          5.2         22           1
 P proline             4.7         20           2
 Q glutamine           2.8         12           1
 R arginine            2.4         10           2
 S serine              8.5         36           2
 T threonine           5.9         25           2
 V valine              6.4         27           2
 W tryptophan          3.3         14           1
 Y tyrosine            1.9          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   retinoblastoma binding protein 7 
RBBP4                 0.900   retinoblastoma binding protein 4 isoform b 
RBBP4                 0.894   retinoblastoma binding protein 4 isoform a 
RBBP4                 0.828   retinoblastoma binding protein 4 isoform c 
LOC391556             0.138   PREDICTED: similar to hCG1643855 
LOC391556             0.138   PREDICTED: hypothetical protein LOC391556 
GRWD1                 0.113   glutamate-rich WD repeat containing 1 
TAF5L                 0.082   PCAF associated factor 65 beta isoform a 
PEX7                  0.077   peroxisomal biogenesis factor 7 
TAF5                  0.072   TBP-associated factor 5 
WDR12                 0.065   WD repeat domain 12 protein 
WDR33                 0.063   WD repeat domain 33 isoform 1 
TBL1X                 0.062   transducin beta-like 1X isoform b 
TBL1X                 0.062   transducin beta-like 1X isoform b 
TBL1X                 0.062   transducin beta-like 1X isoform a 
TBL1X                 0.062   transducin beta-like 1X isoform a 
WDR69                 0.061   WD repeat domain 69 
RFWD2                 0.055   ring finger and WD repeat domain 2 isoform a 
RFWD2                 0.055   ring finger and WD repeat domain 2 isoform d24 [Homo...
TSSC1                 0.055   tumor suppressing subtransferable candidate 1 
WDR17                 0.054   WD repeat domain 17 isoform 2 
WDR17                 0.054   WD repeat domain 17 isoform 1 
CIAO1                 0.054   WD repeat domain 39 
GNB2L1                0.054   guanine nucleotide binding protein (G protein), beta ...
NLE1                  0.054   Notchless gene homolog isoform b 
NLE1                  0.054   Notchless gene homolog isoform a 
CORO6                 0.053   coronin 6 
SNRNP40               0.052   WD repeat domain 57 (U5 snRNP specific) 
TBL1XR1               0.051   transducin (beta)-like 1 X-linked receptor 1 
WDR38                 0.050   WD repeat domain 38 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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