Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: RBBP4 Sequence: fasta or formatted (424aa) NCBI GI: 207029415
Description:

retinoblastoma binding protein 4 isoform b

Referenced in:

Histones, Related Proteins, and Modifying Enzymes
RB1 and Related Functions
WD Repeat Proteins

Other entries for this name:
alt prot [390aa] retinoblastoma binding protein 4 isoform c
alt prot [425aa] retinoblastoma binding protein 4 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7         24           1
 C cysteine            1.2          5           1
 D aspartate           8.5         36           2
 E glutamate           8.3         35           2
 F phenylalanine       3.5         15           1
 G glycine             5.9         25           2
 H histidine           4.7         20           1
 I isoleucine          5.4         23           2
 K lysine              5.4         23           2
 L leucine             7.8         33           2
 M methionine          1.4          6           1
 N asparagine          5.2         22           2
 P proline             5.7         24           2
 Q glutamine           3.1         13           1
 R arginine            2.6         11           2
 S serine              9.4         40           2
 T threonine           5.0         21           1
 V valine              6.4         27           2
 W tryptophan          3.1         13           1
 Y tyrosine            1.9          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   retinoblastoma binding protein 4 isoform b 
RBBP4                 0.995   retinoblastoma binding protein 4 isoform a 
RBBP4                 0.920   retinoblastoma binding protein 4 isoform c 
RBBP7                 0.905   retinoblastoma binding protein 7 
LOC391556             0.165   PREDICTED: similar to hCG1643855 
LOC391556             0.165   PREDICTED: hypothetical protein LOC391556 
GRWD1                 0.115   glutamate-rich WD repeat containing 1 
TAF5L                 0.078   PCAF associated factor 65 beta isoform a 
PEX7                  0.073   peroxisomal biogenesis factor 7 
TAF5                  0.070   TBP-associated factor 5 
WDR12                 0.066   WD repeat domain 12 protein 
WDR33                 0.064   WD repeat domain 33 isoform 1 
WDR51A                0.060   WD repeat domain 51A isoform 3 
WDR51A                0.060   WD repeat domain 51A isoform 2 
WDR51A                0.060   WD repeat domain 51A isoform 1 
NLE1                  0.060   Notchless gene homolog isoform b 
NLE1                  0.060   Notchless gene homolog isoform a 
TBL1X                 0.059   transducin beta-like 1X isoform b 
TBL1X                 0.059   transducin beta-like 1X isoform b 
TBL1X                 0.059   transducin beta-like 1X isoform a 
TBL1X                 0.059   transducin beta-like 1X isoform a 
CORO6                 0.058   coronin 6 
RFWD2                 0.058   ring finger and WD repeat domain 2 isoform a 
RFWD2                 0.058   ring finger and WD repeat domain 2 isoform d24 [Homo...
WDR69                 0.057   WD repeat domain 69 
WDR59                 0.055   WD repeat domain 59 
CIAO1                 0.055   WD repeat domain 39 
WDR38                 0.053   WD repeat domain 38 
TBL1XR1               0.053   transducin (beta)-like 1 X-linked receptor 1 
TSSC1                 0.053   tumor suppressing subtransferable candidate 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press